Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   NI384_RS14180 Genome accession   NZ_CP099928
Coordinates   3068348..3069073 (+) Length   241 a.a.
NCBI ID   WP_069492036.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain BM24B     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3063348..3074073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI384_RS14165 (NI384_14255) - 3064453..3066774 (+) 2322 WP_020904369.1 Tex family protein -
  NI384_RS14170 (NI384_14260) - 3066908..3067372 (-) 465 WP_005459035.1 hypothetical protein -
  NI384_RS14175 (NI384_14265) bioH 3067496..3068263 (-) 768 WP_029817775.1 pimeloyl-ACP methyl ester esterase BioH -
  NI384_RS14180 (NI384_14270) comF 3068348..3069073 (+) 726 WP_069492036.1 ComF family protein Machinery gene
  NI384_RS14185 (NI384_14275) nfuA 3069171..3069755 (+) 585 WP_140098345.1 Fe-S biogenesis protein NfuA -
  NI384_RS14190 (NI384_14280) nudE 3069976..3070545 (+) 570 WP_005459019.1 ADP compounds hydrolase NudE -
  NI384_RS14195 (NI384_14285) cysQ 3070586..3071413 (+) 828 WP_005458987.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  NI384_RS14200 (NI384_14290) - 3071699..3072460 (-) 762 WP_203501015.1 type II secretion system protein N -
  NI384_RS14205 (NI384_14295) - 3072462..3072953 (-) 492 WP_025505527.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27675.89 Da        Isoelectric Point: 8.9991

>NTDB_id=702697 NI384_RS14180 WP_069492036.1 3068348..3069073(+) (comF) [Vibrio parahaemolyticus strain BM24B]
MLSHHWQNIMHRVLSSQCGLCRFPILAAAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQIWHVRALTQLLAQRISTPAPLITTVPLHWQRYLYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHAQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=702697 NI384_RS14180 WP_069492036.1 3068348..3069073(+) (comF) [Vibrio parahaemolyticus strain BM24B]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCTGGC
TGCCGCTCAACCCAATGCGCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGTTGTG
GATTGAGCTTAAAAGCAGAGGAAGCGAATATAGAGAGCATTTGCGGCGAGTGCCTCTCCGAGCCTCCCCCTTGGCAACGG
CTATTTACCTTGGGAGACTACGATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAATATGGCATGT
TCGCGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTGTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGCCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGCCCAGTCACAGCGTGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.199

100

0.722
  comF Vibrio cholerae strain A1552

49.16

98.755

0.485