Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PCP60_RS13445 Genome accession   NZ_CP115296
Coordinates   2918624..2919349 (+) Length   241 a.a.
NCBI ID   WP_004352162.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 188     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2913624..2924349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP60_RS13415 (PCP60_13410) - 2913744..2914622 (-) 879 WP_003103323.1 5-oxoprolinase subunit B family protein -
  PCP60_RS13420 (PCP60_13415) - 2914624..2916000 (-) 1377 WP_073660019.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  PCP60_RS13425 (PCP60_13420) - 2916011..2916259 (-) 249 WP_003084813.1 acetyl-CoA carboxylase -
  PCP60_RS13430 (PCP60_13425) - 2916336..2917094 (-) 759 WP_003103315.1 5-oxoprolinase subunit PxpA -
  PCP60_RS13435 (PCP60_13430) - 2917212..2918138 (+) 927 WP_003118849.1 LysR family transcriptional regulator -
  PCP60_RS13440 (PCP60_13435) - 2918192..2918485 (+) 294 WP_003084806.1 hypothetical protein -
  PCP60_RS13445 (PCP60_13440) comF 2918624..2919349 (+) 726 WP_004352162.1 ComF family protein Machinery gene
  PCP60_RS13450 (PCP60_13445) - 2919391..2919711 (+) 321 WP_003103307.1 YfiM family lipoprotein -
  PCP60_RS13455 (PCP60_13450) - 2919779..2920537 (+) 759 WP_023114736.1 TOBE domain-containing protein -
  PCP60_RS13460 (PCP60_13455) - 2920599..2921573 (+) 975 WP_023114737.1 serine/threonine protein kinase -
  PCP60_RS13465 (PCP60_13460) rarD 2921776..2922672 (+) 897 WP_003103301.1 EamA family transporter RarD -
  PCP60_RS13470 (PCP60_13465) - 2923362..2923877 (-) 516 WP_003084789.1 glycine cleavage system protein R -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27099.58 Da        Isoelectric Point: 11.0325

>NTDB_id=702697 PCP60_RS13445 WP_004352162.1 2918624..2919349(+) (comF) [Pseudomonas aeruginosa strain 188]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATTEHLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=702697 PCP60_RS13445 WP_004352162.1 2918624..2919349(+) (comF) [Pseudomonas aeruginosa strain 188]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCTCGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTGGACCTGCGCTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGACTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCA
CCGAGCACCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.589

100

0.386