Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   NI387_RS15155 Genome accession   NZ_CP099921
Coordinates   3241662..3242387 (+) Length   241 a.a.
NCBI ID   WP_042771783.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain BM25     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3236662..3247387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI387_RS15140 (NI387_15440) - 3237767..3240088 (+) 2322 WP_029855941.1 Tex family protein -
  NI387_RS15145 (NI387_15445) - 3240222..3240686 (-) 465 WP_005459035.1 hypothetical protein -
  NI387_RS15150 (NI387_15450) bioH 3240810..3241577 (-) 768 WP_029822735.1 pimeloyl-ACP methyl ester esterase BioH -
  NI387_RS15155 (NI387_15455) comF 3241662..3242387 (+) 726 WP_042771783.1 amidophosphoribosyltransferase Machinery gene
  NI387_RS15160 (NI387_15460) nfuA 3242485..3243069 (+) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  NI387_RS15165 (NI387_15465) nudE 3243290..3243859 (+) 570 WP_021448936.1 ADP compounds hydrolase NudE -
  NI387_RS15170 (NI387_15470) cysQ 3243901..3244728 (+) 828 WP_017449059.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  NI387_RS15175 (NI387_15475) - 3245014..3245775 (-) 762 WP_140321163.1 type II secretion system protein N -
  NI387_RS15180 (NI387_15480) - 3245777..3246268 (-) 492 WP_005458943.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27766.91 Da        Isoelectric Point: 8.9991

>NTDB_id=702611 NI387_RS15155 WP_042771783.1 3241662..3242387(+) (comF) [Vibrio parahaemolyticus strain BM25]
MLSHHWQNIMHRVLSSQCGLCRFPIQATAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEETNIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHVRALTQLLAQRISTPAPLITTVPLHWQRYLYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHVQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=702611 NI387_RS15155 WP_042771783.1 3241662..3242387(+) (comF) [Vibrio parahaemolyticus strain BM25]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCAGGC
TACCGCTCAACCCAATGCGCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGCTGTG
GATTGAGCTTAAAAGCAGAGGAAACAAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCACCGTGGCAACGG
CTATTTACCTTGGGAGACTACGACTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCGCGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTGTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTAGCTGGTCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGTCCAGTCGCAGCGTGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTGGATGATGTAGTCACGACGGGAAGCACGGTTCGAC
AATTATGCCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(146-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.614

100

0.726
  comF Vibrio cholerae strain A1552

49.58

98.755

0.49