Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PCP18_RS09105 Genome accession   NZ_CP115295
Coordinates   1959110..1959535 (-) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain 199     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1954110..1964535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP18_RS09085 (PCP18_09095) ileS 1954267..1957098 (+) 2832 WP_003102617.1 isoleucine--tRNA ligase -
  PCP18_RS09090 (PCP18_09100) lspA 1957091..1957600 (+) 510 WP_003102615.1 signal peptidase II -
  PCP18_RS09095 (PCP18_09105) fkpB 1957593..1958033 (+) 441 WP_003161775.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  PCP18_RS09100 (PCP18_09110) ispH 1958119..1959063 (+) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  PCP18_RS09105 (PCP18_09115) comF 1959110..1959535 (-) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  PCP18_RS09110 (PCP18_09120) pilY2 1959532..1959879 (-) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  PCP18_RS09115 (PCP18_09125) pilY1 1959881..1963366 (-) 3486 WP_034000905.1 type 4a pilus biogenesis protein PilY1 -
  PCP18_RS09120 (PCP18_09130) pilX 1963378..1963965 (-) 588 WP_003094700.1 type 4a pilus minor pilin PilX -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=702602 PCP18_RS09105 WP_003094721.1 1959110..1959535(-) (comF) [Pseudomonas aeruginosa strain 199]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=702602 PCP18_RS09105 WP_003094721.1 1959110..1959535(-) (comF) [Pseudomonas aeruginosa strain 199]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGGCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383