Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   NI390_RS13670 Genome accession   NZ_CP099915
Coordinates   2912412..2913113 (+) Length   233 a.a.
NCBI ID   WP_222725217.1    Uniprot ID   -
Organism   Vibrio fluvialis strain Isc7A     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2907412..2918113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI390_RS13650 (NI390_13645) - 2907847..2908509 (+) 663 WP_202641554.1 hypothetical protein -
  NI390_RS13655 (NI390_13650) - 2908565..2910874 (+) 2310 WP_020429362.1 Tex family protein -
  NI390_RS13660 (NI390_13655) - 2910956..2911426 (-) 471 WP_140229734.1 ATP-dependent Lon protease -
  NI390_RS13665 (NI390_13660) bioH 2911555..2912325 (-) 771 WP_055453006.1 pimeloyl-ACP methyl ester esterase BioH -
  NI390_RS13670 (NI390_13665) comF 2912412..2913113 (+) 702 WP_222725217.1 phosphoribosyltransferase family protein Machinery gene
  NI390_RS13675 (NI390_13670) nfuA 2913214..2913801 (+) 588 WP_024373335.1 Fe-S biogenesis protein NfuA -
  NI390_RS13680 (NI390_13675) nudE 2913947..2914495 (+) 549 WP_047459232.1 ADP compounds hydrolase NudE -
  NI390_RS13685 (NI390_13680) cysQ 2914519..2915346 (+) 828 WP_172571183.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  NI390_RS13690 (NI390_13685) - 2915376..2916134 (-) 759 WP_308413251.1 type II secretion system protein N -
  NI390_RS13695 (NI390_13690) - 2916134..2916640 (-) 507 WP_024373337.1 type II secretion system protein M -
  NI390_RS13700 (NI390_13695) gspL 2916650..2917861 (-) 1212 WP_308413252.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26362.41 Da        Isoelectric Point: 8.8535

>NTDB_id=702503 NI390_RS13670 WP_222725217.1 2912412..2913113(+) (comF) [Vibrio fluvialis strain Isc7A]
MLTNRLQKTMFSWLRPSCQLCGLPLESHSTQSLCGACLDWYAPTTRCARCGLPCETATEQCGQCLTSPPPWHKLYCLGDY
RFPLSQSVHQLKYQRQFWQAQPLAGLLAPRIVSPAPLVTCVPLHWRRHAWRGFNQSDVLARQLAQQLGSQYQPRLFSRRL
ATPPQQGLNKAQRRRNLNQAFVLNSPPSHRHIAIVDDVVTTGSTVRQLCNLLLDVGVESLDIYCICRTPEPGD

Nucleotide


Download         Length: 702 bp        

>NTDB_id=702503 NI390_RS13670 WP_222725217.1 2912412..2913113(+) (comF) [Vibrio fluvialis strain Isc7A]
ATGTTAACCAATCGACTTCAAAAAACCATGTTTTCGTGGCTGAGACCGTCGTGTCAGCTGTGCGGTTTGCCCCTTGAATC
ACATAGCACGCAGAGCTTGTGTGGCGCATGCCTCGACTGGTACGCACCAACCACGCGCTGCGCTCGCTGCGGCCTGCCTT
GTGAAACCGCCACCGAGCAGTGTGGCCAATGCCTGACATCGCCGCCGCCATGGCACAAGCTCTATTGTTTGGGCGATTAC
CGTTTTCCGCTCAGTCAGAGCGTGCATCAGCTCAAATATCAGCGCCAGTTCTGGCAAGCGCAGCCGCTGGCCGGATTGTT
AGCACCACGAATAGTATCACCCGCCCCACTGGTGACCTGCGTGCCGCTGCACTGGCGCCGCCATGCCTGGCGCGGTTTCA
ATCAAAGTGATGTTTTGGCACGTCAACTTGCGCAGCAACTCGGCAGCCAATACCAGCCTCGGCTGTTTTCCCGTCGCCTG
GCCACCCCGCCGCAGCAAGGCCTGAACAAAGCTCAGCGCCGGCGCAATCTCAACCAAGCTTTTGTCTTAAACAGTCCGCC
GAGCCACAGACACATCGCGATCGTTGATGATGTCGTCACCACAGGCAGTACGGTGCGACAATTATGCAATTTACTTCTTG
ATGTAGGCGTCGAAAGCCTTGATATTTACTGCATATGCCGCACTCCTGAACCGGGTGACTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

65.236

100

0.652
  comF Vibrio campbellii strain DS40M4

49.791

100

0.511