Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   PCP28_RS25380 Genome accession   NZ_CP115293
Coordinates   5026321..5026845 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain 382     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5021321..5031845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP28_RS25365 (PCP28_25345) aroB 5022437..5023543 (-) 1107 WP_003162482.1 3-dehydroquinate synthase -
  PCP28_RS25370 (PCP28_25350) aroK 5023593..5024111 (-) 519 WP_003095833.1 shikimate kinase AroK -
  PCP28_RS25375 (PCP28_25355) pilQ 5024123..5026267 (-) 2145 WP_023114914.1 type 4a pilus secretin PilQ Machinery gene
  PCP28_RS25380 (PCP28_25360) comL/pilP 5026321..5026845 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PCP28_RS25385 (PCP28_25365) pilO 5026842..5027465 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PCP28_RS25390 (PCP28_25370) pilN 5027462..5028058 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  PCP28_RS25395 (PCP28_25375) pilM 5028058..5029122 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PCP28_RS25400 (PCP28_25380) - 5029307..5031778 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=702415 PCP28_RS25380 WP_003095836.1 5026321..5026845(-) (comL/pilP) [Pseudomonas aeruginosa strain 382]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=702415 PCP28_RS25380 WP_003095836.1 5026321..5026845(-) (comL/pilP) [Pseudomonas aeruginosa strain 382]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362