Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PCP88_RS29070 Genome accession   NZ_CP115291
Coordinates   6175552..6175977 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain F003     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6170552..6180977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP88_RS29055 (PCP88_29055) pilX 6171116..6171703 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  PCP88_RS29060 (PCP88_29060) pilY1 6171715..6175206 (+) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -
  PCP88_RS29065 (PCP88_29065) pilY2 6175208..6175555 (+) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  PCP88_RS29070 (PCP88_29070) comF 6175552..6175977 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  PCP88_RS29075 (PCP88_29075) ispH 6176024..6176968 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  PCP88_RS29080 (PCP88_29080) fkpB 6177054..6177494 (-) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  PCP88_RS29085 (PCP88_29085) lspA 6177487..6177996 (-) 510 WP_073655187.1 signal peptidase II -
  PCP88_RS29090 (PCP88_29090) ileS 6177989..6180820 (-) 2832 WP_004352756.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=702344 PCP88_RS29070 WP_003094721.1 6175552..6175977(+) (comF) [Pseudomonas aeruginosa strain F003]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=702344 PCP88_RS29070 WP_003094721.1 6175552..6175977(+) (comF) [Pseudomonas aeruginosa strain F003]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGGCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383