Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PCP88_RS06685 Genome accession   NZ_CP115291
Coordinates   1408710..1409435 (-) Length   241 a.a.
NCBI ID   WP_073655083.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F003     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1403710..1414435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP88_RS06655 (PCP88_06655) - 1403740..1404183 (+) 444 WP_003105215.1 GNAT family N-acetyltransferase -
  PCP88_RS06660 (PCP88_06660) - 1404215..1404730 (+) 516 WP_003084789.1 glycine cleavage system protein R -
  PCP88_RS06665 (PCP88_06665) rarD 1405420..1406316 (-) 897 WP_003103301.1 EamA family transporter RarD -
  PCP88_RS06670 (PCP88_06670) - 1406519..1407493 (-) 975 WP_073655081.1 serine/threonine protein kinase -
  PCP88_RS06675 (PCP88_06675) - 1407555..1408313 (-) 759 WP_003084796.1 TOBE domain-containing protein -
  PCP88_RS06680 (PCP88_06680) - 1408381..1408668 (-) 288 WP_073655082.1 YfiM family lipoprotein -
  PCP88_RS06685 (PCP88_06685) comF 1408710..1409435 (-) 726 WP_073655083.1 ComF family protein Machinery gene
  PCP88_RS06690 (PCP88_06690) - 1409574..1409867 (-) 294 WP_003113255.1 hypothetical protein -
  PCP88_RS06695 (PCP88_06695) - 1409921..1410847 (-) 927 WP_003118849.1 LysR family transcriptional regulator -
  PCP88_RS06700 (PCP88_06700) - 1410965..1411723 (+) 759 WP_003103315.1 5-oxoprolinase subunit PxpA -
  PCP88_RS06705 (PCP88_06705) - 1411800..1412048 (+) 249 WP_003084813.1 acetyl-CoA carboxylase -
  PCP88_RS06710 (PCP88_06710) - 1412059..1413435 (+) 1377 WP_003113254.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  PCP88_RS06715 (PCP88_06715) - 1413437..1414315 (+) 879 WP_003103323.1 5-oxoprolinase subunit B family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27127.60 Da        Isoelectric Point: 10.3032

>NTDB_id=702281 PCP88_RS06685 WP_073655083.1 1408710..1409435(-) (comF) [Pseudomonas aeruginosa strain F003]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQMCGECLLRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLHCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATTEHLSRLLRRADAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=702281 PCP88_RS06685 WP_073655083.1 1408710..1409435(-) (comF) [Pseudomonas aeruginosa strain F003]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGATGTGCGGCGAGTGCCTGCTCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCTCGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTGGACCTGCACTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGGCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCA
CCGAGCACCTTTCCCGCCTGTTGCGCCGGGCGGACGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Double zinc ribbon domain (DZR_2)

(9-65)

Phosphoribosyl transferase domain (Pribosyltran)

(138-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.174

100

0.382