Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PCP67_RS16490 Genome accession   NZ_CP115289
Coordinates   3518209..3518934 (-) Length   241 a.a.
NCBI ID   WP_073656495.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F004     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3513209..3523934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP67_RS16465 (PCP67_16460) - 3513676..3514191 (+) 516 WP_003084789.1 glycine cleavage system protein R -
  PCP67_RS16470 (PCP67_16465) rarD 3514880..3515776 (-) 897 WP_003103301.1 EamA family transporter RarD -
  PCP67_RS16475 (PCP67_16470) - 3515979..3516953 (-) 975 WP_003084794.1 serine/threonine protein kinase -
  PCP67_RS16480 (PCP67_16475) - 3517015..3517773 (-) 759 WP_003084796.1 TOBE domain-containing protein -
  PCP67_RS16485 (PCP67_16480) - 3517841..3518167 (-) 327 WP_023092332.1 YfiM family lipoprotein -
  PCP67_RS16490 (PCP67_16485) comF 3518209..3518934 (-) 726 WP_073656495.1 ComF family protein Machinery gene
  PCP67_RS16495 (PCP67_16490) - 3519073..3519366 (-) 294 WP_003084806.1 hypothetical protein -
  PCP67_RS16500 (PCP67_16495) - 3519420..3520346 (-) 927 WP_023435400.1 LysR family transcriptional regulator -
  PCP67_RS16505 (PCP67_16500) - 3520464..3521222 (+) 759 WP_003111232.1 5-oxoprolinase subunit PxpA -
  PCP67_RS16510 (PCP67_16505) - 3521299..3521547 (+) 249 WP_003084813.1 acetyl-CoA carboxylase -
  PCP67_RS16515 (PCP67_16510) - 3521558..3522934 (+) 1377 WP_023126932.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  PCP67_RS16520 (PCP67_16515) - 3522936..3523814 (+) 879 WP_074222635.1 5-oxoprolinase subunit B family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27060.54 Da        Isoelectric Point: 11.0325

>NTDB_id=702212 PCP67_RS16490 WP_073656495.1 3518209..3518934(-) (comF) [Pseudomonas aeruginosa strain F004]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAERLSRLLRQAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=702212 PCP67_RS16490 WP_073656495.1 3518209..3518934(-) (comF) [Pseudomonas aeruginosa strain F004]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGTGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCACGGC
GCGAACGTCGGCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCCGGCGAGCTGGACCTGCGCTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAAGGCCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGCGCCTTTCCCGTCTGTTGCGCCAGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.174

100

0.382