Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PCP67_RS08605 Genome accession   NZ_CP115289
Coordinates   1798074..1798499 (+) Length   141 a.a.
NCBI ID   WP_023107845.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F004     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1793074..1803499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP67_RS08590 (PCP67_08580) pilX 1793638..1794225 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  PCP67_RS08595 (PCP67_08585) pilY1 1794237..1797728 (+) 3492 WP_023111845.1 type 4a pilus biogenesis protein PilY1 -
  PCP67_RS08600 (PCP67_08590) pilY2 1797730..1798077 (+) 348 WP_003094713.1 type 4a fimbrial biogenesis protein PilY2 -
  PCP67_RS08605 (PCP67_08595) comF 1798074..1798499 (+) 426 WP_023107845.1 type 4a pilus minor pilin PilE Machinery gene
  PCP67_RS08610 (PCP67_08600) ispH 1798546..1799490 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  PCP67_RS08615 (PCP67_08605) fkpB 1799576..1800016 (-) 441 WP_003094726.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  PCP67_RS08620 (PCP67_08610) lspA 1800009..1800518 (-) 510 WP_003094728.1 signal peptidase II -
  PCP67_RS08625 (PCP67_08615) ileS 1800511..1803342 (-) 2832 WP_003094730.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15309.33 Da        Isoelectric Point: 10.0198

>NTDB_id=702175 PCP67_RS08605 WP_023107845.1 1798074..1798499(+) (comF) [Pseudomonas aeruginosa strain F004]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVTKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=702175 PCP67_RS08605 WP_023107845.1 1798074..1798499(+) (comF) [Pseudomonas aeruginosa strain F004]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGCTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGACCAAACTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

41.406

90.78

0.376