Detailed information
Bioinformatically predicted
Overview
| Name | rarA | Type | Machinery gene |
| Locus tag | M2Y46_RS04885 | Genome accession | NZ_AP023347 |
| Coordinates | 1030782..1031957 (+) | Length | 391 a.a. |
| NCBI ID | WP_248415163.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain JSHR6 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1025782..1036957
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M2Y46_RS04860 (JSHR6_09690) | - | 1026064..1026960 (+) | 897 | WP_096395041.1 | OriC activity response regulator | - |
| M2Y46_RS04865 (JSHR6_09700) | - | 1027186..1028052 (+) | 867 | WP_180584685.1 | 5'-3' exonuclease | - |
| M2Y46_RS04870 (JSHR6_09710) | - | 1028120..1029370 (-) | 1251 | WP_248415162.1 | outer membrane family protein | - |
| M2Y46_RS04875 (JSHR6_09720) | - | 1029538..1030404 (+) | 867 | WP_000045798.1 | DnaJ family protein | - |
| M2Y46_RS04880 (JSHR6_09730) | - | 1030414..1030785 (+) | 372 | WP_120911737.1 | helix-turn-helix transcriptional regulator | - |
| M2Y46_RS04885 (JSHR6_09740) | rarA | 1030782..1031957 (+) | 1176 | WP_248415163.1 | replication-associated recombination protein A | Machinery gene |
| M2Y46_RS04890 (JSHR6_09750) | fur | 1032117..1032569 (+) | 453 | WP_000825004.1 | ferric iron uptake transcriptional regulator | - |
| M2Y46_RS04895 (JSHR6_09760) | - | 1032589..1033086 (-) | 498 | WP_248415164.1 | DUF2147 domain-containing protein | - |
| M2Y46_RS04900 (JSHR6_09770) | - | 1033083..1033619 (-) | 537 | WP_212778689.1 | YhcH/YjgK/YiaL family protein | - |
| M2Y46_RS04905 (JSHR6_09780) | fliY | 1033648..1034511 (-) | 864 | WP_248415165.1 | flagellar motor switch protein FliY | - |
| M2Y46_RS04910 (JSHR6_09790) | fliM | 1034515..1035579 (-) | 1065 | WP_180440459.1 | flagellar motor switch protein FliM | - |
| M2Y46_RS04915 (JSHR6_09800) | - | 1035572..1036348 (-) | 777 | WP_000602378.1 | RNA polymerase sigma factor FliA | - |
| M2Y46_RS04920 (JSHR6_09810) | - | 1036326..1036640 (-) | 315 | WP_000867999.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 391 a.a. Molecular weight: 43895.43 Da Isoelectric Point: 7.5000
>NTDB_id=70206 M2Y46_RS04885 WP_248415163.1 1030782..1031957(+) (rarA) [Helicobacter pylori strain JSHR6]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCTK
ALTLLKKQVEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQEGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLNLVSSQGIGFEKTLLEWLDKIRN
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCTK
ALTLLKKQVEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQEGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLNLVSSQGIGFEKTLLEWLDKIRN
Nucleotide
Download Length: 1176 bp
>NTDB_id=70206 M2Y46_RS04885 WP_248415163.1 1030782..1031957(+) (rarA) [Helicobacter pylori strain JSHR6]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCACGCCTTTTTCTATGGTCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTTAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAACTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGCGCTAGCACGCAAGATCCCAATTACAGCCTAA
GCCATGCGATCCGATCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCACTAAA
GCTTTAACATTACTCAAAAAACAAGTAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCCAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCTAAATGACGGATCTTATAGCGATGATACGCATTATAATCTTACTAGTGCATTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTACTATCTGGCACGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCACCCAAGTCTAACACAGCCTAT
AGAGCGATCAATCAGGCTTTGGATTATATTCAAGAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAAATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCACGCCTTTTTCTATGGTCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTTAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAACTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGCGCTAGCACGCAAGATCCCAATTACAGCCTAA
GCCATGCGATCCGATCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCACTAAA
GCTTTAACATTACTCAAAAAACAAGTAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCCAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCTAAATGACGGATCTTATAGCGATGATACGCATTATAATCTTACTAGTGCATTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTACTATCTGGCACGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCACCCAAGTCTAACACAGCCTAT
AGAGCGATCAATCAGGCTTTGGATTATATTCAAGAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAAATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rarA | Bacillus subtilis subsp. subtilis str. 168 |
37.136 |
100 |
0.391 |