Detailed information NTG0070206

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: JMUB898_RS06325
• Genome accession: NZ_AP018587
• Coordinates: 1311114..1313564 (+)
• Length: 816 a.a.
• NCBI ID: WP_044466735.1
• Uniprot ID: -
• Organism: Staphylococcus caprae strain JMUB898
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1306114..1318564

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JMUB898_RS06295 (JMUB898_1268)	-	1306413..1306595 (+)	183	WP_002443234.1	CsbD family protein	-
JMUB898_RS06300 (JMUB898_1269)	-	1306626..1306769 (+)	144	WP_002443232.1	SAS049 family protein	-
JMUB898_RS06305 (JMUB898_1270)	-	1306830..1307825 (-)	996	WP_002443230.1	LLM class flavin-dependent oxidoreductase	-
JMUB898_RS06310 (JMUB898_1271)	-	1308084..1309226 (+)	1143	WP_002443229.1	cysteine desulfurase family protein	-
JMUB898_RS06315 (JMUB898_1272)	mnmA	1309226..1310344 (+)	1119	WP_002443227.1	tRNA 2-thiouridine(34) synthase MnmA	-
JMUB898_RS06320 (JMUB898_1273)	-	1310441..1311112 (+)	672	WP_044466736.1	tetratricopeptide repeat protein	-
JMUB898_RS06325 (JMUB898_1274)	recD2	1311114..1313564 (+)	2451	WP_044466735.1	ATP-dependent RecD-like DNA helicase	Machinery gene
JMUB898_RS06330 (JMUB898_1275)	alaS	1313913..1316543 (+)	2631	WP_044466734.1	alanine--tRNA ligase	-
JMUB898_RS06335 (JMUB898_1276)	-	1316607..1316867 (+)	261	WP_002443220.1	IreB family regulatory phosphoprotein	-
JMUB898_RS06340 (JMUB898_1277)	ruvX	1316870..1317298 (+)	429	WP_002443217.1	Holliday junction resolvase RuvX	-
JMUB898_RS06345 (JMUB898_1278)	-	1317313..1317639 (+)	327	WP_002443216.1	DUF1292 domain-containing protein	-

Sequence

Protein

• Length: 816 a.a.
• Molecular weight: 92036.66 Da
• Isoelectric Point: 4.5038

>NTDB_id=70206 JMUB898_RS06325 WP_044466735.1 1311114..1313564(+) (recD2) [Staphylococcus caprae strain JMUB898]
MSDPTLFDYSMIKGTVDAILFQNNDNFYTVLKVDTIETNESFDSMPTVVGFLPNVVEGDVYTFKGQVVEHPRYGKQLKAE
TFEKELPQTKDAIVSYLSSDLFKGIGKKTAQNIVNALGENAINDILNHPEILQKVPSLPKKKQQQIAEQISANQESEKIM
IRLHDLGFGPKLSMAIYQFYMSDTLKILDENPYQLVYDIKGIGFNKADQLARNIGIAANSPERLKAGLLYILEEECIKQG
HTYLPNSYVIDPTQEMLNDGTDVTIARETLEEMILQLSEEKKLILSDEQVSIPSLYYSELKSVQNLYRIKTNTTKLKEIE
QSDLQMHIGEIESYNKVNYAASQKEALETAMNSKVMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYDDYNEDDYPVVLA
APTGRASKRLQESTGLEAMTIHRLIGWNQETQPEDILDNEINARLIIIDEMSMVDTWLFHQFLSAVPLDAQIIFVGDEDQ
LPSVGPGQVFKDLIDSKTIPRVNLTEVYRQQDGSSIIDLAHRMKMGEPIDITQRFHDRSFINCTSDQIPDVVDKVVQSAV
SKGYNMSDIQVLAPMYKGNAGIKRLNQVLQSILNPKKDDSREIEFGDVVFRKGDKVLQLVNRPNDNIFNGDIGVIVGIFW
AKENALNKDVLVVDFEGNEITFTRQDLLELTHAYCTSIHKSQGSEFPIVIMPIVKQYFRMLQRPILYTGLTRAKQSLVLL
GDPQAFEIGLNTKGQERLTQLNGLLTSYFGNHQVDNESADILTTENKIINNETLDEQEQAIIDESQKDIILSESTIFKID
PMINMGEMTPYDFAER

Nucleotide

• Length: 2451 bp

>NTDB_id=70206 JMUB898_RS06325 WP_044466735.1 1311114..1313564(+) (recD2) [Staphylococcus caprae strain JMUB898]
ATGTCTGACCCTACACTATTTGATTATTCAATGATCAAAGGCACAGTAGATGCTATATTATTTCAAAATAATGATAACTT
CTATACAGTTCTTAAAGTAGACACTATTGAAACAAATGAATCATTTGATAGTATGCCAACAGTTGTAGGGTTTCTTCCAA
ATGTAGTTGAAGGAGACGTGTACACCTTTAAAGGGCAAGTTGTAGAGCATCCACGGTATGGTAAACAATTAAAAGCTGAA
ACCTTTGAAAAGGAATTGCCTCAAACAAAAGATGCCATTGTGAGTTATTTATCTAGTGATTTATTTAAAGGCATCGGTAA
AAAAACGGCACAGAATATCGTTAATGCATTAGGTGAGAACGCAATTAATGATATATTAAATCATCCTGAAATTTTGCAAA
AGGTGCCGAGTTTGCCTAAGAAAAAGCAACAGCAAATTGCTGAACAAATTAGTGCAAATCAAGAATCTGAGAAAATTATG
ATTCGATTACATGATTTAGGTTTCGGTCCAAAACTGTCGATGGCTATCTATCAATTCTATATGAGTGATACGCTTAAAAT
TTTGGACGAAAATCCTTATCAACTCGTTTATGATATTAAAGGAATCGGGTTTAATAAAGCTGACCAACTTGCACGTAATA
TTGGTATTGCTGCGAATTCACCTGAACGTTTGAAAGCGGGTTTGTTATATATACTTGAAGAAGAATGTATCAAACAGGGA
CACACATATCTTCCTAATTCATATGTCATTGATCCGACACAAGAGATGTTAAACGATGGTACTGATGTAACTATTGCTAG
AGAAACACTTGAAGAAATGATATTGCAACTTTCTGAAGAGAAAAAATTAATTCTGAGTGATGAACAAGTATCCATTCCAA
GCTTATATTATTCCGAACTGAAAAGTGTCCAAAATTTATATCGAATTAAGACAAACACAACAAAATTAAAAGAAATCGAA
CAATCTGATCTCCAAATGCATATTGGAGAAATAGAATCGTACAATAAAGTAAATTATGCCGCATCACAAAAAGAAGCACT
TGAAACAGCAATGAATTCGAAAGTAATGCTTCTAACGGGTGGTCCAGGTACAGGTAAAACGACTGTTATCAAAGGGATTG
TTGAACTTTATGCAGAAATTCATGGTTTATCCCTAGATTATGACGACTATAATGAAGATGATTACCCTGTGGTATTAGCT
GCTCCAACCGGACGTGCGTCCAAACGACTTCAAGAATCGACAGGTCTTGAAGCGATGACGATTCATAGACTTATTGGATG
GAATCAAGAGACACAACCTGAAGATATTTTAGACAATGAAATTAATGCACGATTAATCATTATAGATGAAATGTCTATGG
TTGATACGTGGCTTTTCCATCAATTTTTAAGCGCAGTTCCATTAGATGCACAAATCATATTTGTTGGAGATGAAGATCAG
CTTCCTTCAGTCGGCCCAGGTCAAGTATTCAAAGATCTTATTGATTCTAAAACAATCCCCCGTGTCAATTTAACTGAGGT
ATACCGTCAACAAGATGGCTCAAGTATTATCGATTTAGCGCATCGGATGAAGATGGGTGAGCCCATAGATATTACTCAAC
GGTTTCACGATCGTAGTTTTATTAACTGCACCTCTGACCAGATACCTGATGTCGTAGATAAAGTTGTTCAGAGTGCAGTG
AGTAAAGGTTATAATATGAGTGATATCCAAGTCCTTGCGCCAATGTATAAAGGGAATGCTGGTATTAAACGCCTTAACCA
AGTATTACAATCGATTTTAAATCCTAAAAAGGATGATAGTCGTGAAATTGAATTTGGTGATGTTGTTTTCAGAAAAGGCG
ATAAAGTACTTCAATTAGTGAATCGACCGAACGATAATATTTTCAACGGGGATATTGGTGTAATTGTAGGCATTTTCTGG
GCAAAAGAGAATGCTCTAAATAAAGATGTCTTAGTCGTGGATTTCGAAGGGAACGAAATTACGTTCACACGACAAGATTT
ACTAGAATTAACCCACGCCTATTGTACATCAATTCATAAATCGCAAGGTTCTGAATTCCCAATTGTTATTATGCCTATTG
TTAAACAATATTTCCGAATGTTACAGCGCCCAATTCTATACACAGGTTTAACACGTGCTAAGCAATCGCTTGTGTTACTG
GGTGATCCCCAAGCATTTGAAATTGGCTTGAACACGAAAGGCCAAGAACGTTTAACACAATTAAATGGCTTGCTTACCTC
TTATTTTGGTAATCATCAAGTTGATAATGAATCAGCTGACATTTTAACTACTGAAAATAAAATCATCAACAATGAAACGT
TGGATGAACAAGAACAAGCGATCATAGATGAATCTCAAAAAGATATAATATTAAGTGAATCGACGATATTTAAAATAGAC
CCAATGATAAATATGGGAGAAATGACACCTTACGACTTTGCAGAGCGTTGA

Domains

Predicted by InterproScan.

• AAA domain (AAA_30) (339-545)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (585-655)

• Helix-hairpin-helix containing domain (HHH_RecD2) (153-243)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (672-720)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	49.692	99.632	0.495