Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PCP57_RS09140 Genome accession   NZ_CP115287
Coordinates   1979299..1979724 (-) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain F006     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1974299..1984724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP57_RS09120 (PCP57_09130) ileS 1974456..1977287 (+) 2832 WP_042168473.1 isoleucine--tRNA ligase -
  PCP57_RS09125 (PCP57_09135) lspA 1977280..1977789 (+) 510 WP_025271359.1 signal peptidase II -
  PCP57_RS09130 (PCP57_09140) fkpB 1977782..1978222 (+) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  PCP57_RS09135 (PCP57_09145) ispH 1978308..1979252 (+) 945 WP_003134939.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  PCP57_RS09140 (PCP57_09150) comF 1979299..1979724 (-) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  PCP57_RS09145 (PCP57_09155) pilY2 1979721..1980068 (-) 348 WP_121348035.1 type 4a fimbrial biogenesis protein PilY2 -
  PCP57_RS09150 (PCP57_09160) pilY1 1980070..1983555 (-) 3486 WP_058179499.1 type 4a pilus biogenesis protein PilY1 -
  PCP57_RS09155 (PCP57_09165) pilX 1983567..1984154 (-) 588 WP_033972921.1 type 4a pilus minor pilin PilX -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=701987 PCP57_RS09140 WP_003094721.1 1979299..1979724(-) (comF) [Pseudomonas aeruginosa strain F006]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=701987 PCP57_RS09140 WP_003094721.1 1979299..1979724(-) (comF) [Pseudomonas aeruginosa strain F006]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGCTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCGCTGCTCTCGGACGCGGCCGCTCGCC
AGGAACGCTACTATTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383