Detailed information NTG0701787

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LNQ37_RS03390
• Genome accession: NZ_CP099811
• Coordinates: 758122..758913 (-)
• Length: 263 a.a.
• NCBI ID: WP_004722684.1
• Uniprot ID: -
• Organism: Yersinia ruckeri strain NVI-9681
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 753122..763913

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LNQ37_RS03375 (LNQ37_003370)	-	754310..755692 (-)	1383	WP_038275442.1	PepSY-associated TM helix domain-containing protein	-
LNQ37_RS03380 (LNQ37_003375)	gbpA	755812..757302 (-)	1491	WP_004722689.1	N-acetylglucosamine-binding protein GbpA	-
LNQ37_RS03385 (LNQ37_003380)	gspS	757728..758102 (+)	375	WP_004722686.1	type II secretion system pilot lipoprotein GspS	-
LNQ37_RS03390 (LNQ37_003385)	pilD	758122..758913 (-)	792	WP_004722684.1	prepilin peptidase	Machinery gene
LNQ37_RS03395 (LNQ37_003390)	gspM	758913..759410 (-)	498	WP_230596562.1	type II secretion system protein GspM	-
LNQ37_RS03400 (LNQ37_003395)	gspL	759394..760593 (-)	1200	WP_004722681.1	type II secretion system protein GspL	-
LNQ37_RS03405 (LNQ37_003400)	gspK	760595..761680 (-)	1086	WP_230596563.1	type II secretion system minor pseudopilin GspK	-
LNQ37_RS03410 (LNQ37_003405)	gspJ	761670..762275 (-)	606	WP_248578222.1	type II secretion system minor pseudopilin GspJ	-
LNQ37_RS03415 (LNQ37_003410)	gspI	762272..762634 (-)	363	WP_038244547.1	type II secretion system minor pseudopilin GspI	-
LNQ37_RS03420 (LNQ37_003415)	gspH	762659..763234 (-)	576	WP_248578223.1	type II secretion system minor pseudopilin GspH	-
LNQ37_RS03425 (LNQ37_003420)	gspG	763234..763701 (-)	468	WP_038244546.1	type II secretion system major pseudopilin GspG	-

Sequence

Protein

• Length: 263 a.a.
• Molecular weight: 29629.85 Da
• Isoelectric Point: 8.4833

>NTDB_id=701787 LNQ37_RS03390 WP_004722684.1 758122..758913(-) (pilD) [Yersinia ruckeri strain NVI-9681]
MDALYMAQMIAPLWWGGLAVLGLCVGSFLNVAIYRLPLMLTRENPHGFNLCLPHSHCPQCKHSLKWRDNIPVFSWLFLQG
QCRYCRASIPVRYPLVEIMTMLMTLFIAAVIPLGSPLLAALLLSWMLIALTMIDIDHLLLPDNLTLPLLWMGLLFHLFDS
RLALSEAVIGAVAGYLILWCLYWSFWLLTKREALGYGDFKLLAALGAWLGWMALPSLLLIASLCGMSFALAARLLRGRPL
NTALPFGPFLAFGGWILFLQYYR

Nucleotide

• Length: 792 bp

>NTDB_id=701787 LNQ37_RS03390 WP_004722684.1 758122..758913(-) (pilD) [Yersinia ruckeri strain NVI-9681]
ATGGATGCGCTCTATATGGCTCAAATGATAGCGCCACTGTGGTGGGGCGGGCTGGCGGTTCTTGGCCTGTGTGTCGGTAG
TTTTCTCAACGTCGCTATTTATCGGCTACCGCTGATGTTAACCCGCGAAAATCCGCATGGTTTTAATCTGTGTCTACCTC
ATTCCCACTGTCCTCAGTGTAAACATTCGTTGAAATGGCGAGATAATATTCCTGTATTCAGTTGGCTATTCCTGCAAGGA
CAATGTCGTTACTGTCGGGCATCTATCCCAGTGCGCTACCCGCTGGTTGAAATCATGACGATGTTGATGACCTTGTTTAT
TGCTGCAGTCATCCCATTGGGCAGCCCGTTACTGGCCGCACTACTACTCAGTTGGATGCTGATCGCGTTAACCATGATCG
ATATTGACCACTTGCTCTTACCGGATAATCTGACATTGCCTCTGCTATGGATGGGGCTACTTTTTCACCTGTTTGATAGT
CGGTTGGCATTAAGTGAGGCAGTGATTGGTGCTGTCGCAGGATATTTGATCTTATGGTGTCTTTACTGGTCGTTCTGGCT
GTTGACGAAGCGGGAAGCTCTGGGCTACGGAGACTTTAAGTTATTAGCCGCATTAGGTGCCTGGCTAGGATGGATGGCGT
TACCCTCTTTACTTTTGATCGCCTCGCTCTGCGGCATGAGTTTCGCACTGGCCGCACGTCTCCTACGGGGCAGACCACTG
AATACGGCACTGCCATTCGGGCCGTTTCTCGCATTCGGTGGCTGGATTCTATTCCTTCAGTACTACCGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (122-229)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-109)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.181	96.578	0.494
pilD	Vibrio campbellii strain DS40M4	46.667	96.958	0.452
pilD	Neisseria gonorrhoeae MS11	44.531	97.338	0.433
pilD	Acinetobacter baumannii D1279779	42.471	98.479	0.418
pilD	Acinetobacter nosocomialis M2	42.085	98.479	0.414