Detailed information NTG0070170

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: EL289_RS06375
• Genome accession: NZ_AP018586
• Coordinates: 1325945..1328395 (+)
• Length: 816 a.a.
• NCBI ID: WP_044466735.1
• Uniprot ID: -
• Organism: Staphylococcus caprae strain JMUB590
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1320945..1333395

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL289_RS06345 (JMUB590_1274)	-	1321244..1321426 (+)	183	WP_002443234.1	CsbD family protein	-
EL289_RS06350 (JMUB590_1275)	-	1321457..1321600 (+)	144	WP_002443232.1	SAS049 family protein	-
EL289_RS06355 (JMUB590_1276)	-	1321661..1322656 (-)	996	WP_002443230.1	LLM class flavin-dependent oxidoreductase	-
EL289_RS06360 (JMUB590_1277)	-	1322915..1324057 (+)	1143	WP_126501951.1	cysteine desulfurase family protein	-
EL289_RS06365 (JMUB590_1278)	mnmA	1324057..1325175 (+)	1119	WP_002443227.1	tRNA 2-thiouridine(34) synthase MnmA	-
EL289_RS06370 (JMUB590_1279)	-	1325272..1325943 (+)	672	WP_044466736.1	tetratricopeptide repeat protein	-
EL289_RS06375 (JMUB590_1280)	recD2	1325945..1328395 (+)	2451	WP_044466735.1	ATP-dependent RecD-like DNA helicase	Machinery gene
EL289_RS06380 (JMUB590_1281)	alaS	1328744..1331374 (+)	2631	WP_044466734.1	alanine--tRNA ligase	-
EL289_RS06385 (JMUB590_1282)	-	1331438..1331698 (+)	261	WP_002443220.1	IreB family regulatory phosphoprotein	-
EL289_RS06390 (JMUB590_1283)	ruvX	1331701..1332129 (+)	429	WP_002443217.1	Holliday junction resolvase RuvX	-
EL289_RS06395 (JMUB590_1284)	-	1332144..1332470 (+)	327	WP_002443216.1	DUF1292 domain-containing protein	-

Sequence

Protein

• Length: 816 a.a.
• Molecular weight: 92036.66 Da
• Isoelectric Point: 4.5038

>NTDB_id=70170 EL289_RS06375 WP_044466735.1 1325945..1328395(+) (recD2) [Staphylococcus caprae strain JMUB590]
MSDPTLFDYSMIKGTVDAILFQNNDNFYTVLKVDTIETNESFDSMPTVVGFLPNVVEGDVYTFKGQVVEHPRYGKQLKAE
TFEKELPQTKDAIVSYLSSDLFKGIGKKTAQNIVNALGENAINDILNHPEILQKVPSLPKKKQQQIAEQISANQESEKIM
IRLHDLGFGPKLSMAIYQFYMSDTLKILDENPYQLVYDIKGIGFNKADQLARNIGIAANSPERLKAGLLYILEEECIKQG
HTYLPNSYVIDPTQEMLNDGTDVTIARETLEEMILQLSEEKKLILSDEQVSIPSLYYSELKSVQNLYRIKTNTTKLKEIE
QSDLQMHIGEIESYNKVNYAASQKEALETAMNSKVMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYDDYNEDDYPVVLA
APTGRASKRLQESTGLEAMTIHRLIGWNQETQPEDILDNEINARLIIIDEMSMVDTWLFHQFLSAVPLDAQIIFVGDEDQ
LPSVGPGQVFKDLIDSKTIPRVNLTEVYRQQDGSSIIDLAHRMKMGEPIDITQRFHDRSFINCTSDQIPDVVDKVVQSAV
SKGYNMSDIQVLAPMYKGNAGIKRLNQVLQSILNPKKDDSREIEFGDVVFRKGDKVLQLVNRPNDNIFNGDIGVIVGIFW
AKENALNKDVLVVDFEGNEITFTRQDLLELTHAYCTSIHKSQGSEFPIVIMPIVKQYFRMLQRPILYTGLTRAKQSLVLL
GDPQAFEIGLNTKGQERLTQLNGLLTSYFGNHQVDNESADILTTENKIINNETLDEQEQAIIDESQKDIILSESTIFKID
PMINMGEMTPYDFAER

Nucleotide

• Length: 2451 bp

>NTDB_id=70170 EL289_RS06375 WP_044466735.1 1325945..1328395(+) (recD2) [Staphylococcus caprae strain JMUB590]
ATGTCTGACCCTACACTATTTGATTATTCAATGATCAAAGGCACAGTAGATGCTATATTATTTCAAAATAATGATAACTT
CTATACAGTTCTTAAAGTAGACACTATTGAAACAAATGAATCATTTGATAGTATGCCAACAGTTGTAGGGTTTCTTCCAA
ATGTAGTTGAAGGAGACGTGTACACCTTTAAAGGGCAAGTTGTAGAGCATCCACGGTATGGTAAACAATTAAAAGCTGAA
ACCTTTGAAAAGGAATTGCCTCAAACAAAAGATGCCATTGTGAGTTATTTATCTAGTGATTTATTTAAAGGCATCGGTAA
AAAAACGGCACAGAATATCGTTAATGCATTAGGTGAGAACGCAATTAATGATATATTAAATCATCCTGAAATTTTGCAAA
AGGTGCCGAGTTTGCCTAAGAAAAAGCAACAGCAAATTGCTGAACAAATTAGTGCAAATCAAGAATCTGAGAAAATTATG
ATTCGATTACATGATTTAGGTTTCGGTCCAAAACTGTCGATGGCTATCTATCAATTCTATATGAGTGATACGCTTAAAAT
TTTGGACGAAAATCCTTATCAACTCGTTTATGATATTAAAGGAATCGGGTTTAATAAAGCTGACCAACTTGCACGTAATA
TTGGTATTGCTGCGAATTCACCTGAACGTTTGAAAGCGGGTTTGTTATATATACTTGAAGAAGAATGTATCAAACAGGGA
CACACATATCTTCCTAATTCATATGTCATTGATCCGACACAAGAGATGTTAAACGATGGTACTGATGTAACTATTGCTAG
AGAAACACTTGAAGAAATGATATTGCAACTTTCTGAAGAGAAAAAATTAATTCTGAGTGATGAACAAGTATCCATTCCAA
GCTTATATTATTCCGAACTGAAAAGTGTCCAAAATTTATATCGAATTAAGACAAACACAACAAAATTAAAAGAAATCGAA
CAATCTGATCTCCAAATGCATATTGGAGAAATAGAATCGTACAATAAAGTAAATTATGCCGCATCACAAAAAGAAGCACT
TGAAACAGCAATGAATTCGAAAGTAATGCTTCTAACGGGTGGTCCAGGTACAGGTAAAACGACTGTTATCAAAGGGATTG
TTGAACTTTATGCAGAAATTCATGGTTTATCCCTAGATTATGACGACTATAATGAAGATGATTACCCTGTGGTATTAGCT
GCTCCAACCGGACGTGCGTCCAAACGACTTCAAGAATCGACAGGTCTTGAAGCGATGACGATTCATAGACTTATTGGATG
GAATCAAGAGACACAACCTGAAGATATTTTAGACAATGAAATTAATGCACGATTAATCATTATAGATGAAATGTCTATGG
TTGATACGTGGCTTTTCCATCAATTTTTAAGCGCAGTTCCATTAGATGCACAAATCATATTTGTTGGAGATGAAGATCAG
CTTCCTTCAGTCGGCCCAGGTCAAGTATTCAAAGATCTTATTGATTCTAAAACAATCCCCCGTGTCAATTTAACTGAGGT
ATACCGTCAACAAGATGGCTCAAGTATTATCGATTTAGCGCATCGGATGAAGATGGGTGAGCCCATAGATATTACTCAAC
GGTTTCACGATCGTAGTTTTATTAACTGCACCTCTGACCAGATACCTGATGTCGTAGATAAAGTTGTTCAGAGTGCAGTG
AGTAAAGGTTATAATATGAGTGATATCCAAGTCCTTGCGCCAATGTATAAAGGGAATGCTGGTATTAAACGCCTTAACCA
AGTATTACAATCGATTTTAAATCCTAAAAAGGATGATAGTCGTGAAATTGAATTTGGTGATGTTGTTTTCAGAAAAGGCG
ATAAAGTACTTCAATTAGTGAATCGACCGAACGATAATATTTTCAACGGGGATATTGGTGTAATTGTAGGCATTTTCTGG
GCAAAAGAGAATGCTCTAAATAAAGATGTCTTAGTCGTGGATTTCGAAGGGAACGAAATTACGTTCACACGACAAGATTT
ACTAGAATTAACCCACGCCTATTGTACATCAATTCATAAATCGCAAGGTTCTGAATTCCCAATTGTTATTATGCCTATTG
TTAAACAATATTTCCGAATGTTACAGCGCCCAATTCTATACACAGGTTTAACACGTGCTAAGCAATCGCTTGTGTTACTG
GGTGATCCCCAAGCATTTGAAATTGGCTTGAACACGAAAGGCCAAGAACGTTTAACACAATTAAATGGCTTGCTTACCTC
TTATTTTGGTAATCATCAAGTTGATAATGAATCAGCTGACATTTTAACTACTGAAAATAAAATCATCAACAATGAAACGT
TGGATGAACAAGAACAAGCGATCATAGATGAATCTCAAAAAGATATAATATTAAGTGAATCGACGATATTTAAAATAGAC
CCAATGATAAATATGGGAGAAATGACACCTTACGACTTTGCAGAGCGTTGA

Domains

Predicted by InterproScan.

• AAA domain (AAA_30) (339-545)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (585-655)

• Helix-hairpin-helix containing domain (HHH_RecD2) (153-243)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (672-720)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	49.692	99.632	0.495