Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   NH397_RS05240 Genome accession   NZ_CP099799
Coordinates   1088034..1089893 (+) Length   619 a.a.
NCBI ID   WP_066678242.1    Uniprot ID   -
Organism   Clostridium septicum strain RMA 8861     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1083034..1094893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NH397_RS05210 (NH397_05210) - 1083114..1083392 (-) 279 WP_227909620.1 hypothetical protein -
  NH397_RS16055 - 1083343..1083477 (+) 135 WP_265586012.1 hypothetical protein -
  NH397_RS05215 (NH397_05215) - 1083593..1083739 (-) 147 WP_243106750.1 DeoR family transcriptional regulator -
  NH397_RS05220 (NH397_05220) - 1083784..1084062 (+) 279 WP_066678202.1 transaldolase family protein -
  NH397_RS05225 (NH397_05225) - 1084288..1085073 (+) 786 WP_066678203.1 Cof-type HAD-IIB family hydrolase -
  NH397_RS05230 (NH397_05230) - 1085107..1085550 (-) 444 WP_066678250.1 MarR family transcriptional regulator -
  NH397_RS05235 (NH397_05235) - 1085789..1088041 (+) 2253 WP_066678248.1 ABC transporter ATP-binding protein -
  NH397_RS05240 (NH397_05240) rcrQ 1088034..1089893 (+) 1860 WP_066678242.1 ABC transporter ATP-binding protein Regulator
  NH397_RS05245 (NH397_05245) thiD 1090382..1091182 (+) 801 WP_066678240.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  NH397_RS05250 (NH397_05250) thiM 1091210..1091989 (+) 780 WP_066678238.1 hydroxyethylthiazole kinase -
  NH397_RS05255 (NH397_05255) tenA 1091991..1092650 (+) 660 WP_066678236.1 thiaminase II -
  NH397_RS05260 (NH397_05260) thiE 1092675..1093286 (+) 612 WP_066678235.1 thiamine phosphate synthase -
  NH397_RS05265 (NH397_05265) - 1093400..1093651 (+) 252 WP_162925987.1 glycoside hydrolase family 32 protein -
  NH397_RS05270 (NH397_05270) - 1094046..1094507 (+) 462 WP_066678234.1 MarR family transcriptional regulator -

Sequence

Protein


Download         Length: 619 a.a.        Molecular weight: 68709.54 Da        Isoelectric Point: 6.3363

>NTDB_id=701659 NH397_RS05240 WP_066678242.1 1088034..1089893(+) (rcrQ) [Clostridium septicum strain RMA 8861]
MSKKEVSMRKGFGGGPMGGAMRGGEKAKDFKGTMKNLMKYLSPFKWAMLLVVVFAIGSAAFSIIGPKILGKATNKIFDGL
MTKLTGVSGAGIDFTYIGKVLLFLLVLYLISALFSFIQGFVMSGISQKVSYNLRKEISEKINRMPLKYFDTKTHGEVLSR
VTNDVDSVSQNLNQSMTQVITSITTLIGILIMMFSISWIMTIAALLILPISMIFISIVVKKSQKYFKSQQEYLGHVNGQV
EEVYGGHNIVKAFNGEEDAIEEFDRLNSTLYNSAWKSQFLSGMMMPVMTFIGNLGYVMVSILGGWLAIKKTIGVGDILSF
IQYVRSFTQPIAQTAQVANLLQSTAAAAERVFEFLEEEEEDQFAENPVNIENINGQVTFENVSFGYNPEKTIINNFNAKI
KPGQKVAIVGPTGAGKTTIVKLLMRFYDVNSGEILIDGHNIKDFNRDDLRNLFGMVLQDTWLFNGSIMENIRYGKLGSTD
EEVIKAAKAAHVDHFVKTLPDGYNMELNEEANNVSQGQKQLLTIARAILSDPKILILDEATSSVDTRTEVLIQKAMENLM
EGRTSFIIAHRLSTIREADLILVMKDGDIIEQGTHEELLKANGFYATLYNSQFENSEAS

Nucleotide


Download         Length: 1860 bp        

>NTDB_id=701659 NH397_RS05240 WP_066678242.1 1088034..1089893(+) (rcrQ) [Clostridium septicum strain RMA 8861]
ATGAGTAAAAAAGAAGTTAGTATGAGAAAAGGCTTTGGTGGCGGTCCTATGGGTGGAGCCATGAGAGGTGGCGAAAAAGC
TAAGGATTTTAAAGGTACTATGAAAAACCTTATGAAATATTTAAGTCCTTTTAAATGGGCAATGCTTTTAGTAGTAGTTT
TTGCAATAGGTAGTGCAGCTTTTTCTATTATAGGTCCTAAGATTTTAGGTAAGGCAACAAATAAGATTTTTGATGGACTT
ATGACAAAGCTTACAGGAGTTTCTGGAGCTGGTATAGATTTTACTTATATAGGTAAAGTTCTATTATTCTTACTTGTATT
ATATTTAATAAGTGCTTTATTTTCATTTATACAAGGGTTTGTAATGTCAGGAATTTCTCAAAAAGTATCTTATAATTTAA
GAAAAGAAATTTCAGAGAAAATTAATCGTATGCCTCTTAAATATTTTGATACTAAAACACATGGTGAAGTATTATCAAGA
GTTACAAATGATGTAGATAGTGTAAGTCAAAACTTAAACCAAAGTATGACTCAAGTTATTACATCAATTACCACTTTAAT
TGGGATACTTATAATGATGTTTTCTATTAGTTGGATAATGACAATTGCAGCACTATTAATATTGCCTATATCCATGATAT
TTATATCAATAGTAGTAAAAAAATCACAAAAGTATTTTAAATCACAACAAGAGTATTTAGGTCATGTAAATGGTCAAGTT
GAAGAAGTATATGGTGGTCACAATATAGTAAAAGCATTTAATGGTGAAGAAGATGCTATAGAAGAGTTTGATAGATTAAA
TAGTACTTTATATAATTCAGCATGGAAGTCACAATTTTTATCAGGAATGATGATGCCTGTAATGACTTTTATAGGAAATC
TAGGTTATGTAATGGTATCTATTCTTGGTGGATGGCTTGCTATTAAGAAAACAATAGGAGTTGGAGATATTCTTTCATTT
ATTCAATATGTAAGAAGTTTTACACAACCAATTGCTCAAACTGCTCAAGTAGCTAATTTATTACAATCAACAGCAGCTGC
AGCTGAAAGAGTATTTGAATTTTTAGAAGAAGAAGAAGAAGATCAGTTTGCAGAAAATCCAGTTAATATCGAAAATATTA
ACGGTCAAGTTACATTTGAAAATGTTAGTTTTGGATATAATCCAGAAAAGACAATAATAAATAATTTTAATGCTAAAATA
AAGCCAGGACAAAAGGTTGCAATAGTAGGTCCTACAGGAGCAGGAAAAACTACGATTGTAAAACTACTAATGCGTTTTTA
TGATGTAAATAGTGGAGAAATTCTTATAGATGGTCATAATATAAAGGATTTTAATAGAGATGATTTAAGAAACCTATTTG
GTATGGTTCTTCAAGATACTTGGTTATTTAATGGCTCAATTATGGAAAATATAAGATATGGAAAACTAGGTTCAACAGAT
GAAGAAGTTATTAAAGCAGCTAAAGCAGCTCATGTTGATCATTTTGTAAAAACACTTCCAGATGGATATAATATGGAATT
AAATGAAGAAGCTAATAATGTATCACAAGGTCAAAAGCAGTTATTAACAATAGCTCGTGCTATTTTATCAGATCCAAAAA
TATTGATTCTTGATGAAGCAACAAGTTCAGTAGATACTCGTACTGAAGTTTTAATTCAAAAAGCAATGGAAAACCTTATG
GAAGGTAGAACAAGTTTTATAATAGCACATAGATTATCAACTATTAGAGAAGCAGATTTAATTTTAGTAATGAAAGATGG
AGATATTATAGAACAAGGAACTCATGAAGAATTGCTAAAAGCAAATGGATTCTATGCAACTCTTTATAATAGCCAATTTG
AAAATTCAGAAGCATCATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(48-330)

ABC transporter (ABC_tran)

(394-542)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

52.659

94.184

0.496