Detailed information
Bioinformatically predicted
Overview
| Name | rarA | Type | Machinery gene |
| Locus tag | M2Y57_RS04965 | Genome accession | NZ_AP023345 |
| Coordinates | 1050990..1052165 (+) | Length | 391 a.a. |
| NCBI ID | WP_075653262.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain JSHR31 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1045990..1057165
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M2Y57_RS04940 (JSHR31_09700) | - | 1046275..1047171 (+) | 897 | WP_000697547.1 | OriC activity response regulator | - |
| M2Y57_RS04945 (JSHR31_09710) | - | 1047397..1048263 (+) | 867 | WP_080015634.1 | 5'-3' exonuclease | - |
| M2Y57_RS04950 (JSHR31_09720) | - | 1048328..1049578 (-) | 1251 | WP_212876058.1 | hypothetical protein | - |
| M2Y57_RS04955 (JSHR31_09730) | - | 1049746..1050612 (+) | 867 | WP_121025156.1 | DnaJ C-terminal domain-containing protein | - |
| M2Y57_RS04960 (JSHR31_09740) | - | 1050622..1050993 (+) | 372 | WP_000333001.1 | heat shock protein transcriptional repressor HspR | - |
| M2Y57_RS04965 (JSHR31_09750) | rarA | 1050990..1052165 (+) | 1176 | WP_075653262.1 | replication-associated recombination protein A | Machinery gene |
| M2Y57_RS04970 (JSHR31_09760) | fur | 1052326..1052778 (+) | 453 | WP_000824985.1 | ferric iron uptake transcriptional regulator | - |
| M2Y57_RS04975 (JSHR31_09770) | - | 1052798..1053295 (-) | 498 | WP_248425640.1 | DUF2147 domain-containing protein | - |
| M2Y57_RS04980 (JSHR31_09780) | - | 1053292..1053828 (-) | 537 | WP_248425642.1 | YhcH/YjgK/YiaL family protein | - |
| M2Y57_RS04985 (JSHR31_09790) | fliY | 1053856..1054722 (-) | 867 | WP_180440450.1 | flagellar motor switch protein FliY | - |
| M2Y57_RS04990 (JSHR31_09800) | fliM | 1054726..1055790 (-) | 1065 | WP_248425643.1 | flagellar motor switch protein FliM | - |
| M2Y57_RS04995 (JSHR31_09810) | - | 1055783..1056559 (-) | 777 | WP_024115934.1 | RNA polymerase sigma factor FliA | - |
| M2Y57_RS05000 (JSHR31_09820) | - | 1056537..1056851 (-) | 315 | WP_000868000.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 391 a.a. Molecular weight: 43938.58 Da Isoelectric Point: 8.1225
>NTDB_id=70164 M2Y57_RS04965 WP_075653262.1 1050990..1052165(+) (rarA) [Helicobacter pylori strain JSHR31]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTLLNKSDLDKLCTK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIENPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTLLNKSDLDKLCTK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIENPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN
Nucleotide
Download Length: 1176 bp
>NTDB_id=70164 M2Y57_RS04965 WP_075653262.1 1050990..1052165(+) (rarA) [Helicobacter pylori strain JSHR31]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATTTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCTCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTTAATGCAACAGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCAGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCTCCTAAACAAGAGCGATTTAGACAAGCTTTGCACTAAA
GCTTTAACATTACTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAAATCCTATCACTTTAGAAACGCTGCAATCCTTACGACCTCATA
GCCTAAATGATGGATCTTATAGCGATGATACACATTATAATCTTACTAGCGCTCTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATTTAGCGCGCTTGATTGCTGGCGGGGAAAATCCGGAATTTATCGCTAGAAGGCTAGTAAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCCTAT
AGAGCGATCAATCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATTTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCTCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTTAATGCAACAGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCAGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCTCCTAAACAAGAGCGATTTAGACAAGCTTTGCACTAAA
GCTTTAACATTACTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAAATCCTATCACTTTAGAAACGCTGCAATCCTTACGACCTCATA
GCCTAAATGATGGATCTTATAGCGATGATACACATTATAATCTTACTAGCGCTCTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATTTAGCGCGCTTGATTGCTGGCGGGGAAAATCCGGAATTTATCGCTAGAAGGCTAGTAAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCCTAT
AGAGCGATCAATCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rarA | Bacillus subtilis subsp. subtilis str. 168 |
36.893 |
100 |
0.389 |