Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | EL290_RS06670 | Genome accession | NZ_AP018585 |
| Coordinates | 1386912..1387979 (+) | Length | 355 a.a. |
| NCBI ID | WP_049402080.1 | Uniprot ID | - |
| Organism | Staphylococcus caprae strain JMUB145 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1381912..1392979
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL290_RS06640 (JMUB145_1343) | - | 1382331..1383794 (+) | 1464 | WP_044466727.1 | rhomboid family protein | - |
| EL290_RS06645 (JMUB145_1344) | - | 1383775..1383978 (+) | 204 | WP_002443096.1 | YqgQ family protein | - |
| EL290_RS06650 (JMUB145_1345) | - | 1383975..1384961 (+) | 987 | WP_002443095.1 | ROK family glucokinase | - |
| EL290_RS06655 (JMUB145_1346) | - | 1384961..1385284 (+) | 324 | WP_002443093.1 | MTH1187 family thiamine-binding protein | - |
| EL290_RS06660 (JMUB145_1347) | - | 1385288..1385911 (+) | 624 | WP_002443090.1 | MBL fold metallo-hydrolase | - |
| EL290_RS06665 (JMUB145_1348) | comGA | 1385966..1386940 (+) | 975 | WP_002443088.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| EL290_RS06670 (JMUB145_1349) | comGB | 1386912..1387979 (+) | 1068 | WP_049402080.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| EL290_RS06675 (JMUB145_1350) | comGC | 1387993..1388310 (+) | 318 | WP_002443081.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| EL290_RS12780 (JMUB145_1351) | comGD | 1388339..1388737 (+) | 399 | WP_002443080.1 | competence type IV pilus minor pilin ComGD | - |
| EL290_RS06685 (JMUB145_1352) | - | 1388724..1389017 (+) | 294 | WP_002443078.1 | hypothetical protein | - |
| EL290_RS06690 (JMUB145_1353) | - | 1389004..1389432 (+) | 429 | WP_232018998.1 | competence type IV pilus minor pilin ComGF | - |
| EL290_RS06700 (JMUB145_1354) | - | 1389601..1390110 (+) | 510 | WP_002443074.1 | shikimate kinase | - |
| EL290_RS06705 (JMUB145_1355) | gcvT | 1390336..1391427 (+) | 1092 | WP_002443072.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| EL290_RS06710 (JMUB145_1356) | gcvPA | 1391445..1392791 (+) | 1347 | WP_002443070.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
Sequence
Protein
Download Length: 355 a.a. Molecular weight: 41864.99 Da Isoelectric Point: 9.8952
>NTDB_id=70137 EL290_RS06670 WP_049402080.1 1386912..1387979(+) (comGB) [Staphylococcus caprae strain JMUB145]
MKRLSTNIFKFKKRKNLTEPQLIELLQRLNQLLQNGFTLFESFSFLNLHFPYKNKTIGQNIIESLQTGATCYEILKIIGY
PEIILNQIKFAEQYGKLENVITDSIDYMKRNYKAKKALIKTIQYPIVLISIFLVMLIVLNMTVIPQFQQLYSTMNVELST
FQNILTFIITKLPNFLFLFLMLSMIIYFSFITLLNKLPIDKKIDYILKIPILNSYYKIYRTYQFSNELSLFYKNGVSLQS
IVFIYQNEQNNEFFKYLGSQLLEGADNGRTLPLILKNLKCFKNDLIKFIEQGEKSGKLDIELKLYSQMLLQHFEDKVIKQ
TKLIQPVIFFILGLFIVSLYLVIMLPMFELMQTIK
MKRLSTNIFKFKKRKNLTEPQLIELLQRLNQLLQNGFTLFESFSFLNLHFPYKNKTIGQNIIESLQTGATCYEILKIIGY
PEIILNQIKFAEQYGKLENVITDSIDYMKRNYKAKKALIKTIQYPIVLISIFLVMLIVLNMTVIPQFQQLYSTMNVELST
FQNILTFIITKLPNFLFLFLMLSMIIYFSFITLLNKLPIDKKIDYILKIPILNSYYKIYRTYQFSNELSLFYKNGVSLQS
IVFIYQNEQNNEFFKYLGSQLLEGADNGRTLPLILKNLKCFKNDLIKFIEQGEKSGKLDIELKLYSQMLLQHFEDKVIKQ
TKLIQPVIFFILGLFIVSLYLVIMLPMFELMQTIK
Nucleotide
Download Length: 1068 bp
>NTDB_id=70137 EL290_RS06670 WP_049402080.1 1386912..1387979(+) (comGB) [Staphylococcus caprae strain JMUB145]
GTGAAGAGATTGTCGACAAATATATTTAAATTTAAAAAGCGAAAAAATCTTACCGAGCCTCAGTTAATTGAATTACTTCA
ACGACTTAATCAATTATTACAAAATGGCTTTACTTTATTTGAAAGTTTCAGCTTTCTAAATTTACACTTCCCTTATAAAA
ATAAAACGATAGGTCAAAATATCATTGAATCATTACAAACAGGCGCAACATGTTATGAAATTTTAAAAATAATAGGCTAT
CCTGAAATTATTCTTAATCAAATTAAATTCGCAGAACAATATGGAAAACTTGAGAATGTGATAACAGATTCAATTGATTA
TATGAAGAGGAATTATAAAGCTAAAAAAGCACTCATTAAAACCATACAATATCCCATAGTATTAATTAGCATCTTCCTAG
TGATGCTTATCGTTTTGAATATGACAGTTATTCCACAGTTCCAACAATTATATTCTACGATGAATGTAGAATTATCTACC
TTTCAAAATATACTTACTTTTATCATAACGAAACTTCCAAATTTTTTATTTCTATTTCTAATGTTATCAATGATCATTTA
CTTTTCATTCATCACACTTTTAAATAAATTACCCATTGATAAAAAAATAGATTACATCCTCAAAATTCCAATTTTAAACT
CTTATTACAAAATATATAGAACTTATCAATTTTCCAATGAACTTTCATTATTCTATAAAAACGGTGTTAGTCTTCAAAGC
ATCGTCTTTATCTATCAAAATGAACAAAACAACGAATTCTTTAAATACTTGGGAAGTCAATTATTAGAAGGAGCTGATAA
CGGAAGAACACTTCCGCTTATATTAAAAAATTTAAAGTGCTTTAAAAATGATTTAATAAAATTTATCGAGCAAGGAGAAA
AAAGTGGAAAGTTAGATATAGAGCTTAAATTATATAGTCAAATGCTATTGCAACATTTTGAAGATAAAGTCATAAAACAA
ACAAAATTGATCCAACCAGTTATTTTCTTTATTTTAGGCTTGTTTATTGTGTCTTTATATCTCGTCATCATGCTACCTAT
GTTTGAACTTATGCAAACGATTAAGTAA
GTGAAGAGATTGTCGACAAATATATTTAAATTTAAAAAGCGAAAAAATCTTACCGAGCCTCAGTTAATTGAATTACTTCA
ACGACTTAATCAATTATTACAAAATGGCTTTACTTTATTTGAAAGTTTCAGCTTTCTAAATTTACACTTCCCTTATAAAA
ATAAAACGATAGGTCAAAATATCATTGAATCATTACAAACAGGCGCAACATGTTATGAAATTTTAAAAATAATAGGCTAT
CCTGAAATTATTCTTAATCAAATTAAATTCGCAGAACAATATGGAAAACTTGAGAATGTGATAACAGATTCAATTGATTA
TATGAAGAGGAATTATAAAGCTAAAAAAGCACTCATTAAAACCATACAATATCCCATAGTATTAATTAGCATCTTCCTAG
TGATGCTTATCGTTTTGAATATGACAGTTATTCCACAGTTCCAACAATTATATTCTACGATGAATGTAGAATTATCTACC
TTTCAAAATATACTTACTTTTATCATAACGAAACTTCCAAATTTTTTATTTCTATTTCTAATGTTATCAATGATCATTTA
CTTTTCATTCATCACACTTTTAAATAAATTACCCATTGATAAAAAAATAGATTACATCCTCAAAATTCCAATTTTAAACT
CTTATTACAAAATATATAGAACTTATCAATTTTCCAATGAACTTTCATTATTCTATAAAAACGGTGTTAGTCTTCAAAGC
ATCGTCTTTATCTATCAAAATGAACAAAACAACGAATTCTTTAAATACTTGGGAAGTCAATTATTAGAAGGAGCTGATAA
CGGAAGAACACTTCCGCTTATATTAAAAAATTTAAAGTGCTTTAAAAATGATTTAATAAAATTTATCGAGCAAGGAGAAA
AAAGTGGAAAGTTAGATATAGAGCTTAAATTATATAGTCAAATGCTATTGCAACATTTTGAAGATAAAGTCATAAAACAA
ACAAAATTGATCCAACCAGTTATTTTCTTTATTTTAGGCTTGTTTATTGTGTCTTTATATCTCGTCATCATGCTACCTAT
GTTTGAACTTATGCAAACGATTAAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Staphylococcus aureus MW2 |
49.157 |
100 |
0.493 |
| comGB | Staphylococcus aureus N315 |
49.157 |
100 |
0.493 |