Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PCP87_RS07895 Genome accession   NZ_CP115277
Coordinates   1623382..1624107 (+) Length   241 a.a.
NCBI ID   WP_003103309.1    Uniprot ID   Q9I629
Organism   Pseudomonas aeruginosa strain F012     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1618382..1629107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP87_RS07865 (PCP87_07870) - 1618502..1619380 (-) 879 WP_010793521.1 5-oxoprolinase subunit B family protein -
  PCP87_RS07870 (PCP87_07875) - 1619382..1620758 (-) 1377 WP_010793522.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  PCP87_RS07875 (PCP87_07880) - 1620769..1621017 (-) 249 WP_003084813.1 acetyl-CoA carboxylase -
  PCP87_RS07880 (PCP87_07885) - 1621094..1621852 (-) 759 WP_003103315.1 5-oxoprolinase subunit PxpA -
  PCP87_RS07885 (PCP87_07890) - 1621970..1622896 (+) 927 WP_003118849.1 LysR family transcriptional regulator -
  PCP87_RS07890 (PCP87_07895) - 1622950..1623243 (+) 294 WP_003113255.1 hypothetical protein -
  PCP87_RS07895 (PCP87_07900) comF 1623382..1624107 (+) 726 WP_003103309.1 ComF family protein Machinery gene
  PCP87_RS07900 (PCP87_07905) - 1624149..1624469 (+) 321 WP_003103307.1 YfiM family lipoprotein -
  PCP87_RS07905 (PCP87_07910) - 1624537..1625295 (+) 759 WP_003084796.1 TOBE domain-containing protein -
  PCP87_RS07910 (PCP87_07915) - 1625357..1626331 (+) 975 WP_003113256.1 serine/threonine protein kinase -
  PCP87_RS07915 (PCP87_07920) rarD 1626533..1627429 (+) 897 WP_003103301.1 EamA family transporter RarD -
  PCP87_RS07920 (PCP87_07925) - 1628120..1628635 (-) 516 WP_003084789.1 glycine cleavage system protein R -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27088.60 Da        Isoelectric Point: 11.2212

>NTDB_id=701352 PCP87_RS07895 WP_003103309.1 1623382..1624107(+) (comF) [Pseudomonas aeruginosa strain F012]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAERLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=701352 PCP87_RS07895 WP_003103309.1 1623382..1624107(+) (comF) [Pseudomonas aeruginosa strain F012]
ATGTCGTTCCCGCTTCGTCCTCTCACTCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCACTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCACGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTGGACCTGCGCTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGACTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGCGCCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9I629

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.174

100

0.382