Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   NEE09_RS01890 Genome accession   NZ_CP099641
Coordinates   360774..361757 (+) Length   327 a.a.
NCBI ID   WP_223840522.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain ATCC 700671     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 355774..366757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NEE09_RS01865 - 355855..356265 (+) 411 WP_000595757.1 hypothetical protein -
  NEE09_RS01870 ply 356276..357691 (+) 1416 WP_001284363.1 cholesterol-dependent cytolysin pneumolysin -
  NEE09_RS01875 - 358572..359288 (+) 717 WP_000532876.1 YebC/PmpR family DNA-binding transcriptional regulator -
  NEE09_RS01880 - 359412..359882 (+) 471 WP_000517879.1 MarR family winged helix-turn-helix transcriptional regulator -
  NEE09_RS01885 rcrP 359898..360719 (+) 822 WP_000601682.1 ABC transporter permease Regulator
  NEE09_RS01890 rcrQ 360774..361757 (+) 984 WP_223840522.1 ABC transporter ATP-binding protein Regulator
  NEE09_RS01895 - 361823..362185 (+) 363 WP_000078805.1 DUF2200 domain-containing protein -
  NEE09_RS01900 - 362182..362685 (+) 504 WP_000800942.1 phosphatase PAP2 family protein -
  NEE09_RS01905 - 362799..363245 (+) 447 WP_000776589.1 LytTR family DNA-binding domain-containing protein -
  NEE09_RS01910 - 363251..363925 (+) 675 WP_000725750.1 membrane protein -
  NEE09_RS01915 - 364086..364277 (+) 192 WP_000291826.1 cell wall-binding protein -
  NEE09_RS01920 - 364284..364364 (+) 81 WP_223842529.1 hypothetical protein -
  NEE09_RS01925 - 364562..364861 (+) 300 WP_001013974.1 DUF4651 domain-containing protein -
  NEE09_RS01930 - 364858..365175 (+) 318 WP_000615769.1 thioredoxin family protein -
  NEE09_RS01935 ytpR 365191..365817 (+) 627 WP_000578289.1 YtpR family tRNA-binding protein -
  NEE09_RS01940 - 365859..366620 (+) 762 WP_001107758.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 36156.86 Da        Isoelectric Point: 4.4298

>NTDB_id=701186 NEE09_RS01890 WP_223840522.1 360774..361757(+) (rcrQ) [Streptococcus pneumoniae strain ATCC 700671]
MVSAKRINQVLDLHSSIQNPVQVQLTDENFKGQVEFKDVTFRYAANSEAVIEHVSFKAETGQTVAFIGSTGSGKSTLVNL
IPRFYDVSAGEILVDGVNVQDYDFSATAHAGQKVAIVGPTGTGKTTIVNLLMKFYEIDKGSIHIDGVDTKAMTRSEVHDA
FSMVLQDTWLFEGTIRDNLIYNQIGISDERMMEASKAVGIHHFIMTLPDGYDTILDDTVTLSVGQKQLLTIARALLKDAP
LLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGNYEELMAQGGFYADLYNSQF
TEDEAEE

Nucleotide


Download         Length: 984 bp        

>NTDB_id=701186 NEE09_RS01890 WP_223840522.1 360774..361757(+) (rcrQ) [Streptococcus pneumoniae strain ATCC 700671]
ATGGTCTCTGCTAAGCGGATTAATCAAGTTTTAGATTTGCATTCTTCTATCCAAAACCCTGTTCAAGTACAGCTGACTGA
TGAAAACTTCAAAGGTCAGGTCGAGTTTAAGGATGTGACCTTCCGCTATGCGGCAAATTCGGAGGCAGTTATTGAACATG
TTAGCTTTAAAGCAGAAACTGGTCAAACAGTGGCCTTTATTGGGTCAACAGGTTCTGGTAAATCAACTCTGGTCAATCTG
ATTCCACGTTTCTACGACGTGTCAGCAGGAGAAATTCTGGTGGACGGTGTCAATGTTCAAGACTATGACTTCTCTGCGAC
AGCTCATGCTGGTCAAAAGGTTGCCATTGTTGGGCCGACTGGGACTGGTAAGACAACCATTGTCAATCTTTTGATGAAAT
TCTATGAGATTGATAAGGGAAGTATTCACATTGATGGTGTGGATACCAAGGCTATGACGCGTTCAGAAGTGCATGATGCC
TTTTCAATGGTCTTGCAGGATACCTGGCTCTTTGAAGGAACTATTCGAGACAATCTCATCTATAATCAAATAGGGATTAG
TGATGAACGAATGATGGAAGCTAGTAAGGCTGTGGGAATTCACCACTTTATTATGACCTTGCCAGATGGCTATGATACCA
TCTTGGATGACACCGTGACCTTGTCTGTAGGACAAAAACAACTATTGACTATTGCTCGTGCCCTTCTTAAGGATGCACCG
CTTTTGATTTTGGATGAGGCGACTTCTTCTGTTGACACACGGACAGAGGAATTGATCCAAAAAGCCATGGACCGTTTGAT
GGAAGGACGCACATCCTTTGTCATTGCCCACCGCTTGTCAACCATCCGAAATGCAGACTTGATCTTGGTCATGAAAGATG
GAAATATCATCGAGCAAGGCAACTATGAGGAACTGATGGCGCAAGGTGGCTTCTACGCTGACTTGTACAATAGTCAATTT
ACAGAAGATGAAGCAGAAGAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(52-102)

ABC transporter (ABC_tran)

(104-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

80.804

68.502

0.554