Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PCP17_RS20745 Genome accession   NZ_CP115274
Coordinates   4487907..4488332 (-) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain F015     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4482907..4493332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP17_RS20725 (PCP17_20735) ileS 4483064..4485895 (+) 2832 WP_003102617.1 isoleucine--tRNA ligase -
  PCP17_RS20730 (PCP17_20740) lspA 4485888..4486397 (+) 510 WP_003094728.1 signal peptidase II -
  PCP17_RS20735 (PCP17_20745) fkpB 4486390..4486830 (+) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  PCP17_RS20740 (PCP17_20750) ispH 4486916..4487860 (+) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  PCP17_RS20745 (PCP17_20755) comF 4487907..4488332 (-) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  PCP17_RS20750 (PCP17_20760) pilY2 4488329..4488676 (-) 348 WP_012614546.1 type 4a fimbrial biogenesis protein PilY2 -
  PCP17_RS20755 (PCP17_20765) pilY1 4488678..4492169 (-) 3492 WP_023122363.1 type 4a pilus biogenesis protein PilY1 -
  PCP17_RS20760 (PCP17_20770) pilX 4492181..4492768 (-) 588 WP_003112826.1 type 4a pilus minor pilin PilX -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=701097 PCP17_RS20745 WP_003094721.1 4487907..4488332(-) (comF) [Pseudomonas aeruginosa strain F015]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=701097 PCP17_RS20745 WP_003094721.1 4487907..4488332(-) (comF) [Pseudomonas aeruginosa strain F015]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGGCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383