Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PCP45_RS18435 Genome accession   NZ_CP115270
Coordinates   3881088..3881513 (-) Length   141 a.a.
NCBI ID   WP_023107845.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F019     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3876088..3886513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP45_RS18415 (PCP45_18420) ileS 3876246..3879077 (+) 2832 WP_171892807.1 isoleucine--tRNA ligase -
  PCP45_RS18420 (PCP45_18425) lspA 3879070..3879579 (+) 510 WP_003094728.1 signal peptidase II -
  PCP45_RS18425 (PCP45_18430) fkpB 3879572..3880012 (+) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  PCP45_RS18430 (PCP45_18435) ispH 3880098..3881042 (+) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  PCP45_RS18435 (PCP45_18440) comF 3881088..3881513 (-) 426 WP_023107845.1 type 4a pilus minor pilin PilE Machinery gene
  PCP45_RS18440 (PCP45_18445) pilY2 3881510..3881857 (-) 348 WP_021264112.1 type 4a fimbrial biogenesis protein PilY2 -
  PCP45_RS18445 (PCP45_18450) pilY1 3881859..3885350 (-) 3492 WP_171892806.1 type 4a pilus biogenesis protein PilY1 -
  PCP45_RS18450 (PCP45_18455) pilX 3885362..3885949 (-) 588 WP_003094700.1 type 4a pilus minor pilin PilX -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15309.33 Da        Isoelectric Point: 10.0198

>NTDB_id=700680 PCP45_RS18435 WP_023107845.1 3881088..3881513(-) (comF) [Pseudomonas aeruginosa strain F019]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVTKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=700680 PCP45_RS18435 WP_023107845.1 3881088..3881513(-) (comF) [Pseudomonas aeruginosa strain F019]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGCTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGACCAAACTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

41.406

90.78

0.376