Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PCP29_RS00935 Genome accession   NZ_CP115269
Coordinates   174549..175280 (+) Length   243 a.a.
NCBI ID   WP_039026917.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F020     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 169549..180280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP29_RS00905 (PCP29_00905) - 169669..170547 (-) 879 WP_023081616.1 5-oxoprolinase subunit B family protein -
  PCP29_RS00910 (PCP29_00910) - 170549..171925 (-) 1377 WP_003113254.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  PCP29_RS00915 (PCP29_00915) - 171936..172184 (-) 249 WP_003084813.1 acetyl-CoA carboxylase -
  PCP29_RS00920 (PCP29_00920) - 172261..173019 (-) 759 WP_003103315.1 5-oxoprolinase subunit PxpA -
  PCP29_RS00925 (PCP29_00925) - 173137..174063 (+) 927 WP_003118849.1 LysR family transcriptional regulator -
  PCP29_RS00930 (PCP29_00930) - 174117..174410 (+) 294 WP_003084806.1 hypothetical protein -
  PCP29_RS00935 (PCP29_00935) comF 174549..175280 (+) 732 WP_039026917.1 ComF family protein Machinery gene
  PCP29_RS00940 (PCP29_00940) - 175322..175642 (+) 321 WP_003103307.1 YfiM family lipoprotein -
  PCP29_RS00945 (PCP29_00945) - 175710..176468 (+) 759 WP_003084796.1 TOBE domain-containing protein -
  PCP29_RS00950 (PCP29_00950) - 176530..177504 (+) 975 WP_003084794.1 serine/threonine protein kinase -
  PCP29_RS00955 (PCP29_00955) rarD 177707..178603 (+) 897 WP_003103301.1 EamA family transporter RarD -
  PCP29_RS00960 (PCP29_00960) - 179293..179808 (-) 516 WP_003084789.1 glycine cleavage system protein R -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27290.81 Da        Isoelectric Point: 10.8076

>NTDB_id=700511 PCP29_RS00935 WP_039026917.1 174549..175280(+) (comF) [Pseudomonas aeruginosa strain F020]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLPLDGQVCGECLRRPPAYEQAIAPW
RYAFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLHC
DPHSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATTEHLSRLLRRAGAARVDVYCLARTP
KPG

Nucleotide


Download         Length: 732 bp        

>NTDB_id=700511 PCP29_RS00935 WP_039026917.1 174549..175280(+) (comF) [Pseudomonas aeruginosa strain F020]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCCCTGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGG
CGCTACGCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGA
GTTGCTGGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGC
CTCGGCGCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTGGACCTGCACTGC
GATCCGCACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGGCTGGACGCGACGGTGCGGCGGCGCAACCTGCG
CCACGCCTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGG
CCACCACCGAGCACCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCG
AAGCCCGGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(140-240)

Double zinc ribbon domain (DZR_2)

(9-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

39.095

100

0.391