Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PCP43_RS09635 Genome accession   NZ_CP115267
Coordinates   2042007..2042432 (-) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain F021     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2037007..2047432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP43_RS09615 (PCP43_09620) ileS 2037164..2039995 (+) 2832 WP_003102617.1 isoleucine--tRNA ligase -
  PCP43_RS09620 (PCP43_09625) lspA 2039988..2040497 (+) 510 WP_003102615.1 signal peptidase II -
  PCP43_RS09625 (PCP43_09630) fkpB 2040490..2040930 (+) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  PCP43_RS09630 (PCP43_09635) ispH 2041016..2041960 (+) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  PCP43_RS09635 (PCP43_09640) comF 2042007..2042432 (-) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  PCP43_RS09640 (PCP43_09645) pilY2 2042429..2042776 (-) 348 WP_012614546.1 type 4a fimbrial biogenesis protein PilY2 -
  PCP43_RS09645 (PCP43_09650) pilY1 2042778..2046269 (-) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -
  PCP43_RS09650 (PCP43_09655) pilX 2046281..2046868 (-) 588 WP_003112826.1 type 4a pilus minor pilin PilX -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=700445 PCP43_RS09635 WP_003094721.1 2042007..2042432(-) (comF) [Pseudomonas aeruginosa strain F021]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=700445 PCP43_RS09635 WP_003094721.1 2042007..2042432(-) (comF) [Pseudomonas aeruginosa strain F021]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGGCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383