Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PCP11_RS21905 Genome accession   NZ_CP115265
Coordinates   4720803..4721228 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain F022     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4715803..4726228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP11_RS21890 (PCP11_21875) pilX 4716367..4716954 (+) 588 WP_015648054.1 type 4a pilus minor pilin PilX -
  PCP11_RS21895 (PCP11_21880) pilY1 4716966..4720457 (+) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -
  PCP11_RS21900 (PCP11_21885) pilY2 4720459..4720806 (+) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  PCP11_RS21905 (PCP11_21890) comF 4720803..4721228 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  PCP11_RS21910 (PCP11_21895) ispH 4721275..4722219 (-) 945 WP_003134939.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  PCP11_RS21915 (PCP11_21900) fkpB 4722305..4722745 (-) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  PCP11_RS21920 (PCP11_21905) lspA 4722738..4723247 (-) 510 WP_003094728.1 signal peptidase II -
  PCP11_RS21925 (PCP11_21910) ileS 4723240..4726071 (-) 2832 WP_003094730.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=700361 PCP11_RS21905 WP_003094721.1 4720803..4721228(+) (comF) [Pseudomonas aeruginosa strain F022]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=700361 PCP11_RS21905 WP_003094721.1 4720803..4721228(+) (comF) [Pseudomonas aeruginosa strain F022]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACACCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACGCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383