Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PCP74_RS08645 Genome accession   NZ_CP115263
Coordinates   1870840..1871265 (-) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain F023     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1865840..1876265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP74_RS08625 (PCP74_08630) ileS 1865997..1868828 (+) 2832 WP_003102617.1 isoleucine--tRNA ligase -
  PCP74_RS08630 (PCP74_08635) lspA 1868821..1869330 (+) 510 WP_003102615.1 signal peptidase II -
  PCP74_RS08635 (PCP74_08640) fkpB 1869323..1869763 (+) 441 WP_023108763.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  PCP74_RS08640 (PCP74_08645) ispH 1869849..1870793 (+) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  PCP74_RS08645 (PCP74_08650) comF 1870840..1871265 (-) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  PCP74_RS08650 (PCP74_08655) pilY2 1871262..1871609 (-) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  PCP74_RS08655 (PCP74_08660) pilY1 1871611..1875102 (-) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -
  PCP74_RS08660 (PCP74_08665) pilX 1875114..1875701 (-) 588 WP_003112826.1 type 4a pilus minor pilin PilX -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=700241 PCP74_RS08645 WP_003094721.1 1870840..1871265(-) (comF) [Pseudomonas aeruginosa strain F023]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=700241 PCP74_RS08645 WP_003094721.1 1870840..1871265(-) (comF) [Pseudomonas aeruginosa strain F023]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383