Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   PCP26_RS30525 Genome accession   NZ_CP115260
Coordinates   6448410..6449006 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain F026     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6443410..6454006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP26_RS30505 (PCP26_30500) aroK 6444541..6445059 (-) 519 WP_003095833.1 shikimate kinase AroK -
  PCP26_RS30510 (PCP26_30505) pilQ 6445071..6447215 (-) 2145 WP_003135767.1 type 4a pilus secretin PilQ Machinery gene
  PCP26_RS30515 (PCP26_30510) comL/pilP 6447269..6447793 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PCP26_RS30520 (PCP26_30515) pilO 6447790..6448413 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PCP26_RS30525 (PCP26_30520) pilN 6448410..6449006 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  PCP26_RS30530 (PCP26_30525) pilM 6449006..6450070 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PCP26_RS30535 (PCP26_30530) - 6450255..6452726 (+) 2472 WP_003135771.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=699982 PCP26_RS30525 WP_003095839.1 6448410..6449006(-) (pilN) [Pseudomonas aeruginosa strain F026]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=699982 PCP26_RS30525 WP_003095839.1 6448410..6449006(-) (pilN) [Pseudomonas aeruginosa strain F026]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTAGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCGGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369