Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NF199_RS08185 Genome accession   NZ_CP099460
Coordinates   1614735..1615514 (+) Length   259 a.a.
NCBI ID   WP_265606284.1    Uniprot ID   -
Organism   Bacillus velezensis strain E     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1609735..1620514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF199_RS08165 trmFO 1610422..1611729 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NF199_RS08170 xerC 1611799..1612716 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  NF199_RS08175 hslV 1612732..1613277 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  NF199_RS08180 hslU 1613294..1614697 (+) 1404 WP_265606283.1 HslU--HslV peptidase ATPase subunit -
  NF199_RS08185 codY 1614735..1615514 (+) 780 WP_265606284.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NF199_RS08190 flgB 1615868..1616257 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  NF199_RS08195 flgC 1616257..1616709 (+) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  NF199_RS08200 fliE 1616720..1617040 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  NF199_RS08205 fliF 1617083..1618693 (+) 1611 WP_032874889.1 flagellar basal-body MS-ring/collar protein FliF -
  NF199_RS08210 fliG 1618706..1619722 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  NF199_RS08215 fliH 1619715..1620470 (+) 756 WP_032874891.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29125.31 Da        Isoelectric Point: 4.6659

>NTDB_id=699777 NF199_RS08185 WP_265606284.1 1614735..1615514(+) (codY) [Bacillus velezensis strain E]
MALLQKTRIINSMPQARAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=699777 NF199_RS08185 WP_265606284.1 1614735..1615514(+) (codY) [Bacillus velezensis strain E]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCCGCAGGCTCGGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

98.456

100

0.985
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467