Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PCP63_RS24970 Genome accession   NZ_CP115258
Coordinates   5440272..5440697 (-) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain F028     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5435272..5445697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP63_RS24950 (PCP63_24945) ileS 5435429..5438260 (+) 2832 WP_096253161.1 isoleucine--tRNA ligase -
  PCP63_RS24955 (PCP63_24950) lspA 5438253..5438762 (+) 510 WP_003110420.1 signal peptidase II -
  PCP63_RS24960 (PCP63_24955) fkpB 5438755..5439195 (+) 441 WP_023108763.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  PCP63_RS24965 (PCP63_24960) ispH 5439281..5440225 (+) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  PCP63_RS24970 (PCP63_24965) comF 5440272..5440697 (-) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  PCP63_RS24975 (PCP63_24970) pilY2 5440694..5441041 (-) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  PCP63_RS24980 (PCP63_24975) pilY1 5441043..5444528 (-) 3486 WP_033940136.1 type 4a pilus biogenesis protein PilY1 -
  PCP63_RS24985 (PCP63_24980) pilX 5444540..5445127 (-) 588 WP_003094700.1 type 4a pilus minor pilin PilX -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=699771 PCP63_RS24970 WP_003094721.1 5440272..5440697(-) (comF) [Pseudomonas aeruginosa strain F028]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=699771 PCP63_RS24970 WP_003094721.1 5440272..5440697(-) (comF) [Pseudomonas aeruginosa strain F028]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383