Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   PCP47_RS24550 Genome accession   NZ_CP115257
Coordinates   5335110..5335634 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain F029     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5330110..5340634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP47_RS24535 (PCP47_24525) aroB 5331226..5332332 (-) 1107 WP_003112148.1 3-dehydroquinate synthase -
  PCP47_RS24540 (PCP47_24530) aroK 5332382..5332900 (-) 519 WP_003095833.1 shikimate kinase AroK -
  PCP47_RS24545 (PCP47_24535) pilQ 5332912..5335056 (-) 2145 WP_073658738.1 type 4a pilus secretin PilQ Machinery gene
  PCP47_RS24550 (PCP47_24540) comL/pilP 5335110..5335634 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PCP47_RS24555 (PCP47_24545) pilO 5335631..5336254 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PCP47_RS24560 (PCP47_24550) pilN 5336251..5336847 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  PCP47_RS24565 (PCP47_24555) pilM 5336847..5337911 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PCP47_RS24570 (PCP47_24560) - 5338096..5340564 (+) 2469 WP_329033092.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=699658 PCP47_RS24550 WP_003095836.1 5335110..5335634(-) (comL/pilP) [Pseudomonas aeruginosa strain F029]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=699658 PCP47_RS24550 WP_003095836.1 5335110..5335634(-) (comL/pilP) [Pseudomonas aeruginosa strain F029]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362