Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PCP47_RS21995 Genome accession   NZ_CP115257
Coordinates   4762440..4762865 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain F029     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4757440..4767865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP47_RS21980 (PCP47_21970) pilX 4758004..4758591 (+) 588 WP_003102605.1 type 4a pilus minor pilin PilX -
  PCP47_RS21985 (PCP47_21975) pilY1 4758603..4762094 (+) 3492 WP_003102607.1 type 4a pilus biogenesis protein PilY1 -
  PCP47_RS21990 (PCP47_21980) pilY2 4762096..4762443 (+) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  PCP47_RS21995 (PCP47_21985) comF 4762440..4762865 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  PCP47_RS22000 (PCP47_21990) ispH 4762912..4763856 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  PCP47_RS22005 (PCP47_21995) fkpB 4763942..4764382 (-) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  PCP47_RS22010 (PCP47_22000) lspA 4764375..4764884 (-) 510 WP_003102615.1 signal peptidase II -
  PCP47_RS22015 (PCP47_22005) ileS 4764877..4767708 (-) 2832 WP_003102617.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=699652 PCP47_RS21995 WP_003094721.1 4762440..4762865(+) (comF) [Pseudomonas aeruginosa strain F029]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=699652 PCP47_RS21995 WP_003094721.1 4762440..4762865(+) (comF) [Pseudomonas aeruginosa strain F029]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383