Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   NE411_RS14835 Genome accession   NZ_CP099450
Coordinates   2811335..2813671 (-) Length   778 a.a.
NCBI ID   WP_000528074.1    Uniprot ID   A0AAP5L406
Organism   Bacillus pacificus strain ANSB901     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2806335..2818671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NE411_RS14810 (NE411_14785) - 2808997..2809341 (+) 345 WP_000209593.1 PH domain-containing protein -
  NE411_RS14815 (NE411_14790) - 2809377..2810447 (-) 1071 WP_000793116.1 AI-2E family transporter -
  NE411_RS14820 (NE411_14795) - 2810623..2810835 (+) 213 WP_000242550.1 hypothetical protein -
  NE411_RS14825 (NE411_14800) - 2810872..2811000 (-) 129 WP_001053553.1 YrzQ family protein -
  NE411_RS14830 (NE411_14805) - 2811019..2811207 (-) 189 WP_000469281.1 hypothetical protein -
  NE411_RS14835 (NE411_14810) recD2 2811335..2813671 (-) 2337 WP_000528074.1 ATP-dependent RecD-like DNA helicase Machinery gene
  NE411_RS14840 (NE411_14815) - 2813767..2814426 (-) 660 WP_000066391.1 tetratricopeptide repeat protein -
  NE411_RS14845 (NE411_14820) mnmA 2814537..2815652 (-) 1116 WP_001038008.1 tRNA 2-thiouridine(34) synthase MnmA -
  NE411_RS14850 (NE411_14825) - 2815669..2816814 (-) 1146 WP_000439905.1 cysteine desulfurase family protein -
  NE411_RS14855 (NE411_14830) cymR 2816850..2817266 (-) 417 WP_000704116.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87398.91 Da        Isoelectric Point: 5.1464

>NTDB_id=699592 NE411_RS14835 WP_000528074.1 2811335..2813671(-) (recD2) [Bacillus pacificus strain ANSB901]
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYLVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEYAISKIMDDPEALNGVVNKQKAQEIYETIVEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYQLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVS
LQLGHVYMRKDQLVRETMSLLNNQEGRVTEEDIIGCIEMMQSEGKVIIEEERVYLASLFYSEKGVVKSIRRLMNQEETPS
FPEAEVLKTLGEIEEQLSVQYAPLQQEAIQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKNGTLPPDLAQNQKDRSFIGCTGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKREKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLASRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=699592 NE411_RS14835 WP_000528074.1 2811335..2813671(-) (recD2) [Bacillus pacificus strain ANSB901]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGAGAAAAAGTTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAAACGAATGAAACGTACGATGAAAAAAAAGTGATGA
TAAACGGTCATTTTCCCCGCATGCATGAAGATGAAGTGTTTACGTTGACAGGGCATTTTAAAGACCATCCGAAGTATGGG
AAACAATATTTAGTTGAAACGTTTAAGAAAGAATTGCCGCAAACAAAAGCAGGTATGGTGCAATATTTAGCGAGTGATTT
ATTTAAAGGGATAGGAAAGCGTACAGCTGAAAAAATTGTGGACCATCTAGGGGAATATGCTATTTCTAAAATTATGGATG
ATCCTGAGGCTTTAAATGGTGTTGTAAACAAGCAAAAAGCGCAAGAAATATATGAGACAATTGTTGAACATCAAGGATTA
GAGAAAGTAATGAGTTTTTTAAATGGTTACGGTTTTGGAACGAAGCTTTCTATTAAGATTTACCAACAATATAAAGAGAT
GACATTAGAAGTGATTCGTAATAATCCATATCAGCTTATTGAAGAAGTGGATGGAATTGGATTTGGAAGAGCGGATGATA
TAGGACGTGCGTTAGGGATATCGGGTAATCATGATGATCGTGTACGTGCGGGATGTTTTTATACGTTAGAGAATGTATCA
TTACAACTTGGTCACGTTTATATGAGAAAAGATCAACTTGTAAGAGAAACGATGTCACTTTTAAATAATCAAGAAGGAAG
AGTGACGGAGGAAGACATTATAGGTTGTATTGAAATGATGCAAAGTGAAGGGAAAGTCATTATTGAAGAAGAACGAGTGT
ATTTGGCATCGTTATTCTACTCTGAAAAAGGTGTTGTAAAGTCTATTCGCAGGCTCATGAATCAGGAGGAAACACCTTCA
TTCCCTGAAGCAGAAGTGTTAAAGACGTTAGGTGAAATTGAAGAACAACTGAGCGTACAGTATGCACCACTTCAGCAAGA
AGCAATTCAAACGGCACTTCATAAACCGATGATGTTATTGACAGGTGGACCAGGAACAGGAAAAACAACAGTTATTAAAG
GAATTGTTGAAATGTATGCGTCACTTCACGGGCTATCGTTAAATCCGAATGAATACAGTGATGATAATCCATTTCCGATA
TTATTAACGGCTCCAACAGGAAGGGCAGCGAAGCGAATGAGTGAATCGACAGGACTTCCAGCTTGTACAATTCACCGTTT
ACTTGGCTGGACGCCAGAAGGGTCTTTCCAGCGTAATGAAACAGATCCGGTACAAGGGAAGTTGCTTATTATTGATGAAT
TTTCAATGGTTGATATTTGGCTTGCAAATCAGCTGTTTAAGTCATTGCCGACGAACATTCAAGTTATCGTTGTAGGTGAT
GAAGATCAATTACCATCTGTAGGACCTGGACAAGTATTGAAAGATTTATTGAATGCAGGTGCAGTTCCAACTGTAAAGCT
TACTGAAATTTATCGTCAAGCGGAAGGTTCATCAGTAATTCAACTTGCTCATGCGATAAAAAATGGAACACTCCCACCAG
ATTTAGCGCAAAATCAAAAAGATCGTTCATTTATCGGCTGCACAGGAGCTCAAATTGTTGAGGTTGTTAAGAAGGTTTGT
GAAAATGCTAAGACAAAAGGTTTTAGTGCAAGAGATGTACAAGTATTGGCCCCGATGTATCGTGGACCGGCCGGTATTAA
TGTACTAAACGAAGCGTTGCAAGAAGTATTTAATCCGAAAAGGGAAAAGAGTAAAGAAATTGCTTATGGTGATGTTGTAT
ATCGAAGAGGCGATAAAGTCTTGCAACTCGTTAATCAGCCGGAGAGTCAAGTGTTTAATGGTGATATCGGAGAAATTGTT
TCGGTGTTTTATGCAAAAGAGAACGTTGAGCAACAAGATATGATTATCGTTTCATTTGATGGAATTGAGGTAACATATAC
AAAACCAGATTTAAATCAAATTACACATGCCTATTGCTGTTCCATTCATAAATCGCAAGGTAGTGAGTTTCCGATTGTAA
TTATGCCGATAGTAAAAAGTTATAATCGTATGTTACGTCGTAATTTAATTTATACTGGTATTACAAGAAGTAAGAAGTTC
CTTATTATTTGCGGGGAGGAAGCTGCTTTCCAGTCTGGTGTAAACCGCCTTGATGATGCAATGCGTCAAACGACTTTAGC
GAGTCGATTGCAGGAATCGCAAGGAGAAGTACAGATGGTAACAGTGAATGGCGAAGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)

AAA domain (AAA_30)

(341-548)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.143

100

0.581