Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NE411_RS11615 Genome accession   NZ_CP099450
Coordinates   2241539..2242318 (-) Length   259 a.a.
NCBI ID   WP_000421288.1    Uniprot ID   Q81WK7
Organism   Bacillus pacificus strain ANSB901     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2236539..2247318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NE411_RS11590 (NE411_11570) uppS 2237287..2238063 (-) 777 WP_000971300.1 isoprenyl transferase -
  NE411_RS11595 (NE411_11575) frr 2238149..2238706 (-) 558 WP_000531500.1 ribosome recycling factor -
  NE411_RS11600 (NE411_11580) pyrH 2238709..2239431 (-) 723 WP_000042663.1 UMP kinase -
  NE411_RS11605 (NE411_11585) tsf 2239498..2240385 (-) 888 WP_001018580.1 translation elongation factor Ts -
  NE411_RS11610 (NE411_11590) rpsB 2240489..2241190 (-) 702 WP_000111483.1 30S ribosomal protein S2 -
  NE411_RS11615 (NE411_11595) codY 2241539..2242318 (-) 780 WP_000421288.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NE411_RS11620 (NE411_11600) hslU 2242396..2243787 (-) 1392 WP_000550081.1 ATP-dependent protease ATPase subunit HslU -
  NE411_RS11625 (NE411_11605) hslV 2243810..2244352 (-) 543 WP_000526271.1 ATP-dependent protease proteolytic subunit HslV -
  NE411_RS11630 (NE411_11610) xerC 2244395..2245294 (-) 900 WP_001101230.1 tyrosine recombinase XerC -
  NE411_RS11635 (NE411_11615) trmFO 2245360..2246664 (-) 1305 WP_002028254.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28774.05 Da        Isoelectric Point: 4.7947

>NTDB_id=699584 NE411_RS11615 WP_000421288.1 2241539..2242318(-) (codY) [Bacillus pacificus strain ANSB901]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=699584 NE411_RS11615 WP_000421288.1 2241539..2242318(-) (codY) [Bacillus pacificus strain ANSB901]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGCTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATTGAAGAAGAAGCGCGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGTGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCACGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q81WK7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.081

100

0.811
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459