Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   PCP13_RS06110 Genome accession   NZ_CP115256
Coordinates   1309630..1310154 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain F030     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1304630..1315154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP13_RS06095 (PCP13_06100) aroB 1305746..1306852 (-) 1107 WP_003162482.1 3-dehydroquinate synthase -
  PCP13_RS06100 (PCP13_06105) aroK 1306902..1307420 (-) 519 WP_003095833.1 shikimate kinase AroK -
  PCP13_RS06105 (PCP13_06110) pilQ 1307432..1309576 (-) 2145 WP_012614629.1 type 4a pilus secretin PilQ Machinery gene
  PCP13_RS06110 (PCP13_06115) comL/pilP 1309630..1310154 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PCP13_RS06115 (PCP13_06120) pilO 1310151..1310774 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PCP13_RS06120 (PCP13_06125) pilN 1310771..1311367 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  PCP13_RS06125 (PCP13_06130) pilM 1311367..1312431 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PCP13_RS06130 (PCP13_06135) - 1312616..1315087 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=699512 PCP13_RS06110 WP_003095836.1 1309630..1310154(-) (comL/pilP) [Pseudomonas aeruginosa strain F030]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=699512 PCP13_RS06110 WP_003095836.1 1309630..1310154(-) (comL/pilP) [Pseudomonas aeruginosa strain F030]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362