Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PCP69_RS05870 Genome accession   NZ_CP115255
Coordinates   1233554..1233979 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain F031     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1228554..1238979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP69_RS05855 (PCP69_05855) pilX 1229124..1229711 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  PCP69_RS05860 (PCP69_05860) pilY1 1229723..1233208 (+) 3486 WP_033940136.1 type 4a pilus biogenesis protein PilY1 -
  PCP69_RS05865 (PCP69_05865) pilY2 1233210..1233557 (+) 348 WP_113887078.1 type 4a fimbrial biogenesis protein PilY2 -
  PCP69_RS05870 (PCP69_05870) comF 1233554..1233979 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  PCP69_RS05875 (PCP69_05875) ispH 1234026..1234970 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  PCP69_RS05880 (PCP69_05880) fkpB 1235056..1235496 (-) 441 WP_023108763.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  PCP69_RS05885 (PCP69_05885) lspA 1235489..1235998 (-) 510 WP_003110420.1 signal peptidase II -
  PCP69_RS05890 (PCP69_05890) ileS 1235991..1238822 (-) 2832 WP_003094730.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=699409 PCP69_RS05870 WP_003094721.1 1233554..1233979(+) (comF) [Pseudomonas aeruginosa strain F031]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=699409 PCP69_RS05870 WP_003094721.1 1233554..1233979(+) (comF) [Pseudomonas aeruginosa strain F031]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383