Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PCP21_RS08210 Genome accession   NZ_CP115247
Coordinates   1737851..1738276 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain F039     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1732851..1743276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP21_RS08195 (PCP21_08185) pilX 1733415..1734002 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  PCP21_RS08200 (PCP21_08190) pilY1 1734014..1737505 (+) 3492 WP_010793785.1 type 4a pilus biogenesis protein PilY1 -
  PCP21_RS08205 (PCP21_08195) pilY2 1737507..1737854 (+) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  PCP21_RS08210 (PCP21_08200) comF 1737851..1738276 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  PCP21_RS08215 (PCP21_08205) ispH 1738323..1739267 (-) 945 WP_003112824.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  PCP21_RS08220 (PCP21_08210) fkpB 1739353..1739793 (-) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  PCP21_RS08225 (PCP21_08215) lspA 1739786..1740295 (-) 510 WP_003102615.1 signal peptidase II -
  PCP21_RS08230 (PCP21_08220) ileS 1740288..1743119 (-) 2832 WP_003102617.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=698604 PCP21_RS08210 WP_003094721.1 1737851..1738276(+) (comF) [Pseudomonas aeruginosa strain F039]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=698604 PCP21_RS08210 WP_003094721.1 1737851..1738276(+) (comF) [Pseudomonas aeruginosa strain F039]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383