Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   EP162_RS01620 Genome accession   NZ_AP018524
Coordinates   373816..375600 (+) Length   594 a.a.
NCBI ID   WP_013773276.1    Uniprot ID   F3Y8L0
Organism   Melissococcus plutonius strain DAT585     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 368816..380600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EP162_RS01600 (DAT585_0321) rihA 369494..370435 (+) 942 WP_127468629.1 pyrimidine-specific ribonucleoside hydrolase RihA -
  EP162_RS01605 - 370599..370883 (-) 285 WP_013773272.1 hypothetical protein -
  EP162_RS01610 (DAT585_0323) - 371537..371974 (+) 438 WP_013773274.1 MarR family winged helix-turn-helix transcriptional regulator -
  EP162_RS01615 (DAT585_0324) rcrP 372054..373823 (+) 1770 WP_013773275.1 ABC transporter ATP-binding protein Regulator
  EP162_RS01620 (DAT585_0325) rcrQ 373816..375600 (+) 1785 WP_013773276.1 ABC transporter ATP-binding protein Regulator
  EP162_RS01625 (DAT585_0326) - 376101..377414 (-) 1314 Protein_327 MFS transporter -
  EP162_RS09275 - 377448..377657 (-) 210 WP_013773278.1 hypothetical protein -
  EP162_RS01630 (DAT585_0327) - 377658..379319 (-) 1662 WP_013773279.1 polysaccharide lyase family protein -

Sequence

Protein


Download         Length: 594 a.a.        Molecular weight: 65975.26 Da        Isoelectric Point: 6.9603

>NTDB_id=69838 EP162_RS01620 WP_013773276.1 373816..375600(+) (rcrQ) [Melissococcus plutonius strain DAT585]
MSKNKSSKKISWTNLKKYASSYTVPFIGAIILSALSSIATISGPDKLSEITDTITAGLRTSIDTDKVVRICIYLACLYGI
GVLLNYSQGFITATIVQKFSQKLRRNISEKINRLPLKYFDSNSQGDTLSRLTNDLDTVGQSLNQGFSMLIPATTLLIGCI
IMMLHSNWMLSVTTVLSVLVSFAIAIAILLLSQKHFAAQQKKLGLISSYVEEIYSGHNTIYAYNARQEAKENFNELNEDL
YSSGWKAQFLSGITQPLMAFIGNFGFVMVCVVGSILALKGTIHFGVVVAFMVYVRLFTNPLSQLAQAFTVLQPAVVSLDR
VFEFLNEEEMADESTKTYQLTNAKGNVSFEHVSFGYLPNQTIIHDFSVSAAAGSKIAIVGPTGAGKTTIVNLLMKFYEIN
KGKILIDGKSINDMTREEVHDQFCMVLQDTWLFEGTVKENLIFNQKDISDEEIIKACKAADVHHFITTLPKGYDTVLDDS
IELSAGQKQLMTIARALIKKAPMLILDEATSSVDTRTEILIQKAMDKLIEGKTSFVIAHRLSTIRNADKILVMQHGDIIE
QGNHEELLQKHGFYAELYNSQFSKQKDVEAIFNQ

Nucleotide


Download         Length: 1785 bp        

>NTDB_id=69838 EP162_RS01620 WP_013773276.1 373816..375600(+) (rcrQ) [Melissococcus plutonius strain DAT585]
ATGAGTAAAAATAAATCCTCAAAAAAAATTAGTTGGACAAACTTAAAAAAATATGCTAGTTCGTATACCGTGCCATTTAT
CGGTGCGATTATTCTTTCGGCCTTGAGTAGTATAGCTACAATTTCAGGGCCAGATAAATTAAGTGAGATTACTGATACGA
TTACAGCTGGGTTAAGGACTTCTATTGATACAGATAAGGTTGTTCGAATTTGTATCTATTTAGCTTGTTTATATGGTATT
GGTGTTTTGCTGAATTATTCTCAAGGATTTATTACAGCAACAATTGTTCAAAAATTTTCACAAAAATTGCGACGAAATAT
TTCTGAGAAGATTAATCGTTTGCCTTTAAAATACTTTGATTCAAATAGTCAGGGAGATACATTAAGTCGCCTAACAAATG
ATTTAGATACGGTTGGACAATCTTTAAACCAAGGATTTAGTATGCTAATACCTGCTACGACTCTACTTATTGGTTGTATT
ATTATGATGCTTCATAGTAATTGGATGTTAAGTGTTACAACTGTTTTATCTGTTTTAGTTAGTTTTGCTATTGCTATTGC
CATTTTGTTGCTTTCACAAAAGCATTTTGCTGCCCAACAAAAGAAACTAGGTTTGATCTCTAGTTATGTAGAAGAAATTT
ATTCAGGACATAATACGATTTATGCCTATAATGCGAGACAGGAAGCAAAAGAAAATTTTAATGAGTTGAATGAAGATTTA
TATTCAAGTGGTTGGAAAGCACAATTTCTATCCGGTATTACACAGCCATTAATGGCTTTTATTGGTAATTTTGGTTTTGT
CATGGTTTGTGTAGTAGGTTCAATCTTAGCATTAAAAGGAACCATTCACTTTGGGGTTGTTGTTGCCTTTATGGTTTATG
TTCGGTTGTTTACAAACCCACTTTCTCAATTAGCACAAGCTTTTACGGTATTACAACCAGCTGTTGTTTCTTTGGATAGA
GTATTTGAATTCTTGAATGAAGAAGAAATGGCAGATGAATCAACAAAAACATATCAGCTAACTAATGCGAAAGGAAATGT
TTCTTTTGAACATGTAAGTTTCGGTTATCTTCCTAATCAAACGATTATTCATGATTTTTCAGTTAGTGCTGCTGCAGGCA
GCAAGATTGCGATTGTAGGACCTACTGGAGCTGGTAAAACTACTATTGTAAACTTATTGATGAAATTCTATGAGATAAAT
AAAGGAAAAATTTTAATTGATGGTAAATCGATTAATGACATGACGCGGGAAGAAGTTCATGATCAATTTTGTATGGTGTT
ACAAGATACCTGGTTATTTGAAGGAACGGTAAAAGAAAATTTAATCTTCAATCAAAAAGATATCAGTGATGAAGAAATCA
TTAAAGCCTGTAAAGCAGCAGATGTCCATCATTTTATTACAACTTTACCGAAGGGATATGATACTGTATTAGATGATAGT
ATCGAATTATCAGCTGGGCAAAAGCAATTAATGACTATTGCTAGAGCACTCATTAAAAAAGCGCCAATGTTGATCTTAGA
CGAAGCAACTAGTTCTGTCGATACAAGAACAGAAATACTGATTCAAAAAGCAATGGATAAATTAATAGAAGGAAAAACCT
CCTTTGTCATTGCTCATCGTCTTTCAACCATACGGAATGCAGATAAAATATTGGTTATGCAACATGGAGATATTATTGAA
CAAGGGAACCATGAAGAGTTATTACAAAAGCATGGTTTCTATGCAGAACTTTATAATAGTCAATTTTCAAAACAAAAAGA
TGTAGAAGCTATCTTTAATCAATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(27-301)

ABC transporter (ABC_tran)

(364-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F3Y8L0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

60.241

97.811

0.589

Multiple sequence alignment