Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   NF668_RS01100 Genome accession   NZ_CP098925
Coordinates   249088..249828 (+) Length   246 a.a.
NCBI ID   WP_234214862.1    Uniprot ID   -
Organism   Porphyromonas gingivalis strain grey     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 244088..254828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF668_RS01080 (NF668_01075) aspS 244530..246293 (-) 1764 WP_077112157.1 aspartate--tRNA ligase -
  NF668_RS11005 - 246479..246727 (-) 249 WP_363324469.1 DUF1661 domain-containing protein -
  NF668_RS01085 (NF668_01080) ribD 246724..247716 (-) 993 WP_301557215.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  NF668_RS01090 (NF668_01085) prmC 247741..248622 (+) 882 WP_301557216.1 peptide chain release factor N(5)-glutamine methyltransferase -
  NF668_RS01095 (NF668_01090) - 248619..249104 (+) 486 WP_301557217.1 regulatory protein RecX -
  NF668_RS01100 (NF668_01095) comF 249088..249828 (+) 741 WP_234214862.1 ComF family protein Machinery gene
  NF668_RS01105 (NF668_01100) - 249958..252027 (-) 2070 WP_301557218.1 M13 family metallopeptidase -
  NF668_RS01110 (NF668_01105) - 252046..252948 (-) 903 WP_301557219.1 nucleotidyltransferase -
  NF668_RS01115 (NF668_01110) - 253130..253270 (-) 141 WP_021663364.1 hypothetical protein -
  NF668_RS01120 (NF668_01115) - 253368..253949 (-) 582 WP_004583806.1 sigma-70 family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27465.91 Da        Isoelectric Point: 10.0451

>NTDB_id=698290 NF668_RS01100 WP_234214862.1 249088..249828(+) (comF) [Porphyromonas gingivalis strain grey]
MRKTANGTGRHIRLLIRKVLDLFFPRYCPVCDSLLAETEIGVCPRCMVRMPRYIEGMQYGLDRLNGDVYIDALYSLFIFK
EDGGVRPMIHALKYGGYSEIGEMLGRMAGRSYPFLSKDYDLIVPVPLHPRKQRKRGYNQALLIAQGLSRVTGIPVQEGLR
RKVYTDSQTGQSYSERKSAMKGKFALSSNTRVAGIRVLLVDDVLTTGATVQAAAEPLAEAFAAKIGVLVAAVTKRPSNWS
HYSDER

Nucleotide


Download         Length: 741 bp        

>NTDB_id=698290 NF668_RS01100 WP_234214862.1 249088..249828(+) (comF) [Porphyromonas gingivalis strain grey]
ATGAGGAAGACAGCTAACGGTACGGGCCGGCATATCCGATTGCTGATTCGTAAGGTGTTGGATCTGTTTTTCCCTCGCTA
TTGTCCTGTATGCGACAGCTTGCTCGCCGAGACGGAGATCGGGGTCTGTCCTCGTTGCATGGTGAGAATGCCACGGTATA
TCGAAGGGATGCAATATGGATTAGATCGTCTGAATGGGGATGTTTATATCGACGCGCTGTACAGCCTTTTTATTTTCAAA
GAGGACGGGGGTGTAAGGCCTATGATACACGCACTAAAATATGGAGGATACAGTGAGATCGGCGAAATGCTCGGACGAAT
GGCCGGCCGATCCTATCCTTTCCTGTCCAAGGATTACGATCTGATAGTGCCGGTTCCTTTACACCCACGCAAACAACGTA
AGCGTGGCTACAATCAGGCACTCCTCATCGCACAGGGATTAAGTCGCGTAACGGGAATACCTGTTCAAGAAGGTTTGCGC
AGAAAGGTATATACGGACAGTCAGACCGGACAGTCCTATTCGGAACGAAAGTCAGCCATGAAAGGGAAGTTTGCCCTCTC
CTCGAATACGCGCGTGGCCGGTATCCGTGTTCTTTTGGTGGACGATGTGCTGACTACCGGAGCTACGGTACAGGCTGCGG
CCGAGCCATTGGCAGAAGCCTTTGCGGCCAAGATCGGTGTACTGGTGGCAGCCGTTACCAAGCGTCCCTCGAATTGGTCT
CATTATTCTGATGAGCGATAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(140-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Porphyromonas gingivalis W83

99.593

100

0.996