Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   M5C73_RS11120 Genome accession   NZ_CP098790
Coordinates   2238669..2239607 (-) Length   312 a.a.
NCBI ID   WP_012898520.1    Uniprot ID   A0A2A9ILQ4
Organism   Lactococcus lactis strain WiKim0124     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2233669..2244607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5C73_RS11095 (M5C73_11095) frr 2233787..2234344 (-) 558 WP_004254618.1 ribosome recycling factor -
  M5C73_RS11100 (M5C73_11100) pyrH 2234556..2235272 (-) 717 WP_021464089.1 UMP kinase -
  M5C73_RS11105 (M5C73_11105) - 2235357..2235809 (-) 453 WP_250354462.1 hypothetical protein -
  M5C73_RS11110 (M5C73_11110) - 2235943..2237130 (-) 1188 WP_015427114.1 acetate kinase -
  M5C73_RS11115 (M5C73_11115) - 2237287..2238474 (-) 1188 WP_252160115.1 acetate kinase -
  M5C73_RS11120 (M5C73_11120) comYH 2238669..2239607 (-) 939 WP_012898520.1 class I SAM-dependent methyltransferase Machinery gene
  M5C73_RS11125 (M5C73_11125) - 2239695..2239946 (-) 252 WP_004254583.1 DUF3165 family protein -
  M5C73_RS11130 (M5C73_11130) typA 2240047..2241879 (-) 1833 WP_021723473.1 translational GTPase TypA -
  M5C73_RS12580 - 2242067..2242479 (-) 413 Protein_2166 hypothetical protein -
  M5C73_RS11140 (M5C73_11140) - 2242526..2242930 (-) 405 WP_033900784.1 hypothetical protein -
  M5C73_RS11145 (M5C73_11145) - 2242949..2243740 (-) 792 WP_230317979.1 hypothetical protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34798.94 Da        Isoelectric Point: 4.3717

>NTDB_id=697986 M5C73_RS11120 WP_012898520.1 2238669..2239607(-) (comYH) [Lactococcus lactis strain WiKim0124]
MDMEKVAQGFELVVANIMLLSEKLDTDFYDAFVEQNAAFLDDTDQGIVELSVNNDKLRQLNLSNKEWQKLFQFVLLKGSQ
VAPLQPNHAMTPDAIGLIFNFIIEHLNKNSELRLIEFGSGMGNLAETLLVNLNKKVDYVGFEVDDLLLDLSASMAEIMGS
QAEFMQIDAVQKRLMEPADVVVSDLPIGFYPDDEVAKNFEVATTDGHTFAHHLLIEQSFNYLKEGSFAIFLAPEDLLTSP
QGPLLKEWISKHGSVMAVITLPKSLFNADAKAIYVLKKGPAAHATFAHPLSSLTDRESLEVFMEEFTKIVKL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=697986 M5C73_RS11120 WP_012898520.1 2238669..2239607(-) (comYH) [Lactococcus lactis strain WiKim0124]
ATGGATATGGAAAAAGTGGCTCAAGGTTTTGAGCTAGTTGTTGCAAATATTATGTTACTATCTGAGAAATTGGATACAGA
TTTTTATGATGCTTTTGTAGAACAAAATGCTGCTTTTTTAGATGATACTGACCAAGGAATTGTTGAATTGTCAGTAAATA
ATGACAAACTTCGTCAGTTAAATTTATCAAATAAGGAGTGGCAAAAACTTTTTCAATTTGTTTTGTTGAAAGGGTCACAA
GTCGCACCACTTCAGCCCAATCATGCAATGACTCCAGATGCAATTGGTTTAATTTTTAATTTCATTATTGAACATCTTAA
TAAAAATTCTGAACTTCGTTTAATTGAATTTGGGTCTGGCATGGGTAATCTTGCTGAAACGCTTTTGGTTAATCTTAATA
AAAAGGTTGATTATGTAGGCTTTGAAGTTGATGATTTACTTTTAGATTTGTCTGCTTCAATGGCTGAAATTATGGGGAGT
CAGGCTGAGTTCATGCAAATTGATGCAGTACAAAAGCGTTTGATGGAACCTGCAGACGTTGTTGTCAGTGATTTACCAAT
TGGTTTTTATCCAGATGATGAAGTTGCAAAGAATTTTGAAGTTGCGACTACTGACGGACATACTTTTGCTCATCATCTTT
TGATTGAGCAATCATTTAATTATTTAAAAGAGGGTTCTTTTGCCATTTTCCTAGCTCCAGAAGATTTACTGACAAGTCCT
CAAGGACCACTATTAAAGGAGTGGATTAGTAAACATGGAAGTGTGATGGCTGTCATCACTTTACCAAAATCACTTTTTAA
TGCTGATGCTAAGGCGATTTATGTTTTGAAAAAGGGGCCGGCTGCACATGCAACTTTTGCTCACCCTTTGTCTTCACTGA
CAGACAGAGAAAGTTTAGAAGTCTTTATGGAAGAATTTACAAAAATTGTAAAATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A9ILQ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

48.882

100

0.49
  comYH Streptococcus mutans UA159

48.562

100

0.487