Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LLCC_RS01895 Genome accession   NZ_AP018499
Coordinates   370943..371731 (-) Length   262 a.a.
NCBI ID   WP_061777757.1    Uniprot ID   A0AAD1JZC8
Organism   Lactococcus cremoris strain C4     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 365943..376731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLCC_RS01880 (LLCC_0413) gatB 367442..368875 (-) 1434 WP_011675223.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  LLCC_RS01885 (LLCC_0414) gatA 368900..370360 (-) 1461 WP_014571887.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  LLCC_RS01890 (LLCC_0415) gatC 370360..370665 (-) 306 WP_011675221.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  LLCC_RS01895 (LLCC_0416) codY 370943..371731 (-) 789 WP_061777757.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LLCC_RS01900 (LLCC_0417) - 371884..373098 (-) 1215 WP_011675219.1 pyridoxal phosphate-dependent aminotransferase -
  LLCC_RS01905 (LLCC_0418) - 373228..374808 (-) 1581 WP_126354595.1 glycosyltransferase -
  LLCC_RS01910 (LLCC_0419) - 375006..375245 (-) 240 WP_061777759.1 hypothetical protein -
  LLCC_RS01915 (LLCC_0420) - 375257..375466 (-) 210 WP_014571884.1 hypothetical protein -
  LLCC_RS01920 (LLCC_0421) - 375635..376420 (-) 786 WP_061777760.1 DNA/RNA non-specific endonuclease -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29172.51 Da        Isoelectric Point: 4.5254

>NTDB_id=69779 LLCC_RS01895 WP_061777757.1 370943..371731(-) (codY) [Lactococcus cremoris strain C4]
MATLLEKTRKITAILQDGVTDLQQELPYNSMTERLANVIDCNACVINTKGELLGYSLPYNTNNDRVDQFFYDRKLPDEYV
RAAVRIYDTMANVPVDRPLAIFPEESLSDFPKGVTTLAPIYGSGMRLGTFIMWREDGEFTDDDLVLVELATTVIGVQLSN
LKLEQMEENIRKDTMATMAVNTLSYSEMKAVKAIIEELDGEEGHVIASVIADKIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLNTGLFDKLAGRNF

Nucleotide


Download         Length: 789 bp        

>NTDB_id=69779 LLCC_RS01895 WP_061777757.1 370943..371731(-) (codY) [Lactococcus cremoris strain C4]
GTGGCTACATTACTTGAAAAAACACGTAAAATCACCGCGATTTTGCAAGATGGAGTGACCGATTTGCAACAAGAGTTGCC
ATACAACAGTATGACTGAACGCTTGGCAAACGTCATTGATTGCAACGCCTGCGTGATTAATACGAAGGGCGAGTTGCTTG
GTTACTCATTGCCTTACAATACAAACAATGATCGCGTTGACCAATTTTTCTACGATCGTAAATTGCCTGACGAATACGTT
CGTGCAGCAGTACGTATTTACGATACAATGGCAAACGTTCCTGTTGATCGTCCTTTAGCAATTTTCCCAGAAGAAAGTCT
TAGCGATTTTCCAAAAGGTGTAACAACTTTAGCGCCTATCTATGGTTCTGGAATGCGTCTTGGAACATTTATTATGTGGC
GCGAAGATGGTGAATTTACAGATGACGATCTTGTTTTGGTTGAGCTTGCAACAACAGTAATCGGTGTACAACTCTCAAAC
CTTAAACTTGAACAAATGGAAGAAAATATCCGTAAAGACACTATGGCAACAATGGCTGTTAATACACTTTCTTACTCAGA
AATGAAAGCTGTCAAAGCAATTATTGAAGAACTTGATGGTGAAGAAGGGCATGTTATTGCCTCTGTCATTGCTGACAAGA
TTGGTATTACACGTTCAGTGATTGTTAATGCTTTACGTAAACTGGAATCTGCTGGTATTATTGAATCACGTTCACTTGGT
ATGAAAGGAACTTATCTTAAAGTTCTTAATACTGGTTTGTTTGATAAACTTGCTGGACGTAATTTCTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(201-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

99.237

100

0.992
  codY Bacillus subtilis subsp. subtilis str. 168

47.244

96.947

0.458

Multiple sequence alignment