Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   NDK47_RS18140 Genome accession   NZ_CP098755
Coordinates   3633036..3635294 (-) Length   752 a.a.
NCBI ID   WP_251871168.1    Uniprot ID   -
Organism   Brevibacillus ruminantium strain BB3-R1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3628036..3640294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDK47_RS18115 (NDK47_18115) - 3629396..3630253 (-) 858 WP_251871162.1 MurR/RpiR family transcriptional regulator -
  NDK47_RS18120 (NDK47_18120) - 3630268..3631779 (-) 1512 WP_251871163.1 M81 family metallopeptidase -
  NDK47_RS18125 (NDK47_18125) - 3632023..3632208 (-) 186 WP_251871164.1 hypothetical protein -
  NDK47_RS18130 (NDK47_18130) - 3632235..3632441 (-) 207 WP_251871166.1 DUF2797 domain-containing protein -
  NDK47_RS18135 (NDK47_18135) - 3632479..3632961 (-) 483 WP_251871167.1 PRC-barrel domain-containing protein -
  NDK47_RS18140 (NDK47_18140) recD2 3633036..3635294 (-) 2259 WP_251871168.1 ATP-dependent RecD-like DNA helicase Machinery gene
  NDK47_RS18145 (NDK47_18145) - 3635442..3637106 (-) 1665 WP_251871169.1 methyl-accepting chemotaxis protein -
  NDK47_RS18150 (NDK47_18150) - 3637356..3637754 (+) 399 WP_251871171.1 GntR family transcriptional regulator -
  NDK47_RS18155 (NDK47_18155) - 3637751..3638668 (+) 918 WP_251871172.1 ABC transporter ATP-binding protein -
  NDK47_RS18160 (NDK47_18160) - 3638634..3639455 (+) 822 WP_251871174.1 ABC transporter permease -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 84959.41 Da        Isoelectric Point: 5.8808

>NTDB_id=697729 NDK47_RS18140 WP_251871168.1 3633036..3635294(-) (recD2) [Brevibacillus ruminantium strain BB3-R1]
MSQQTLPLFAEPFVRGSIVQEIFYNEETWYGVIRLKVEETSEAIKESEVVVVGNFPRPHPEELYTFYGEWKTHPRFGQQF
VASRYERETPKTVAGVEKYLASGLFQGIGKKMAKRIVEHLGVEALSIIADRPEALVEIPGITENRAKQIYESVMEHRSLE
QAMVFLYEFGIGVQLALRIYQTYKLETMKVLTEEPYRLIEDVQGIGFKRADEIARSTGIAASSEERVQAAAIFTLQEASY
AEGHVFLPIAELCEKTLRLLHECGGHRFSPEEMELAIEGLFVVSKVMWDEERVYLPSLFFAEVGLAKRLRFFADRDEFGS
FPVSELYHALGAVEEELAITYAQTQRDAIEQAIKSGLMLLTGGPGTGKTTVIRGICRVFAHLHGISFDLRKYDETNPFPI
VLAAPTGRAAKRMTETTGLPAMTIHRLLGWKGESFEHDGEHPIRGKLLIVDEMSMVDIWLANQLFRALPNDIQVILVGDP
DQLPSVGPGNVLQDMIRSGLLPRVQLTEIYRQAQESSIIRLAHDVRKGIVPSDLLKSSPDRRFFTSSPHEVNEAVKQICL
GAVKKGYTAKDVQVLAPMYKGNAGVNRLNEELQELFNPKVGQKREVTFGETAFRTGDKVLQLVNNAEEQVFNGDMGEIVA
IFYPNENAENEEMIVVSFDGREVTYKRSAYHQLTLAYCCSVHKSQGSEFPIVVMPFVKNYHRMLRRKLVYTGITRSKSFL
IMCGEPEAFRIAVQSNEEGVRYSYLEERLKQG

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=697729 NDK47_RS18140 WP_251871168.1 3633036..3635294(-) (recD2) [Brevibacillus ruminantium strain BB3-R1]
ATGTCGCAGCAAACACTCCCTTTGTTTGCCGAACCGTTTGTTCGTGGATCGATCGTTCAAGAAATTTTTTACAATGAAGA
AACGTGGTACGGAGTTATTCGTCTTAAAGTAGAGGAGACTTCGGAAGCGATCAAAGAATCTGAGGTGGTCGTAGTCGGAA
ATTTTCCAAGGCCGCATCCTGAAGAACTTTACACATTCTACGGAGAATGGAAAACACACCCCCGTTTTGGGCAGCAATTT
GTCGCTTCCCGCTATGAGCGCGAAACGCCGAAAACGGTGGCTGGCGTCGAAAAATACCTGGCCAGTGGCCTCTTCCAGGG
AATCGGAAAAAAGATGGCGAAACGGATCGTGGAGCATCTCGGTGTCGAAGCGCTATCCATCATCGCAGACCGTCCCGAAG
CATTGGTTGAGATACCCGGGATTACGGAAAACCGTGCCAAGCAAATTTATGAATCGGTGATGGAACATCGTTCCTTGGAA
CAGGCCATGGTGTTTTTGTATGAGTTCGGAATCGGGGTTCAACTGGCATTGCGCATCTACCAGACCTACAAGCTGGAAAC
GATGAAGGTGCTCACAGAGGAACCTTACCGCCTGATTGAGGATGTGCAGGGGATAGGCTTCAAGCGGGCGGATGAGATCG
CTCGTTCGACCGGGATTGCCGCCTCTTCGGAAGAACGCGTCCAGGCAGCCGCGATTTTTACGCTTCAAGAAGCCTCTTAT
GCCGAAGGACACGTTTTTCTCCCCATTGCAGAGCTTTGTGAAAAAACACTGCGTTTGCTGCATGAATGCGGCGGCCACCG
CTTTTCGCCAGAGGAGATGGAGCTTGCGATAGAGGGCTTGTTCGTGGTATCCAAAGTGATGTGGGACGAGGAGCGGGTAT
ACCTCCCCAGCCTCTTTTTTGCTGAAGTAGGACTGGCCAAACGACTTCGTTTTTTCGCCGATCGTGACGAATTTGGTTCG
TTTCCTGTCTCGGAGCTGTACCATGCGCTCGGCGCAGTCGAAGAAGAATTGGCCATCACCTATGCCCAAACACAACGCGA
CGCGATTGAGCAAGCGATCAAATCTGGGCTGATGCTGCTGACGGGAGGACCGGGGACTGGGAAAACAACGGTCATTCGCG
GGATTTGCCGAGTGTTTGCCCATCTGCATGGTATTTCCTTTGACCTGAGAAAATACGACGAAACCAATCCTTTCCCCATC
GTACTGGCTGCACCAACAGGCCGTGCTGCCAAGCGAATGACAGAGACAACCGGATTGCCGGCCATGACAATTCACCGTTT
GCTCGGCTGGAAGGGCGAGAGCTTCGAACATGACGGAGAACACCCGATCCGCGGAAAACTCCTGATTGTTGACGAGATGT
CGATGGTCGATATTTGGCTGGCCAACCAGTTGTTCAGAGCGTTGCCAAATGACATTCAGGTGATTCTCGTCGGGGACCCG
GACCAGTTGCCCTCTGTCGGCCCGGGCAACGTGCTGCAGGATATGATCCGCTCGGGACTATTGCCGCGGGTTCAGCTTAC
GGAAATCTACCGGCAAGCCCAGGAATCTTCAATCATTCGTCTCGCCCATGATGTGCGAAAAGGGATCGTTCCGTCCGATC
TGTTGAAATCCTCACCGGATCGAAGATTTTTCACAAGTTCGCCACATGAAGTAAATGAAGCAGTGAAACAAATTTGTCTC
GGGGCCGTAAAAAAAGGATATACAGCAAAAGATGTACAAGTTCTTGCCCCCATGTACAAAGGTAATGCAGGAGTCAACCG
GCTGAATGAGGAGCTTCAGGAGCTGTTTAACCCCAAAGTGGGACAGAAGCGTGAAGTGACTTTTGGTGAAACCGCATTTC
GCACAGGGGATAAGGTGCTTCAGCTGGTAAACAACGCCGAGGAGCAAGTGTTCAACGGCGATATGGGTGAAATCGTTGCG
ATTTTTTACCCAAATGAAAACGCAGAGAACGAAGAGATGATCGTGGTTTCTTTTGATGGTCGAGAAGTGACGTACAAGCG
ATCTGCCTACCATCAGCTAACACTTGCCTATTGCTGCTCTGTCCACAAGTCACAAGGCAGTGAGTTTCCGATCGTTGTGA
TGCCTTTTGTGAAAAACTACCATCGCATGCTTCGACGCAAGCTGGTGTATACGGGAATCACTCGCAGCAAATCATTTCTG
ATCATGTGTGGAGAACCGGAAGCTTTTCGCATCGCCGTCCAAAGTAATGAGGAGGGTGTGCGTTACAGCTACCTGGAGGA
ACGTCTGAAACAAGGCTGA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(588-658)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-722)

Helix-hairpin-helix containing domain (HHH_RecD2)

(155-246)

Helix-hairpin-helix domain (HHH_5)

(106-152)

AAA domain (AAA_30)

(341-531)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50.134

99.468

0.499