Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   PCP08_RS22670 Genome accession   NZ_CP115234
Coordinates   4896412..4896936 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain F048     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4891412..4901936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP08_RS22655 (PCP08_22645) aroB 4892528..4893634 (-) 1107 WP_003114574.1 3-dehydroquinate synthase -
  PCP08_RS22660 (PCP08_22650) aroK 4893684..4894202 (-) 519 WP_003095833.1 shikimate kinase AroK -
  PCP08_RS22665 (PCP08_22655) pilQ 4894214..4896358 (-) 2145 WP_003114575.1 type 4a pilus secretin PilQ Machinery gene
  PCP08_RS22670 (PCP08_22660) comL/pilP 4896412..4896936 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PCP08_RS22675 (PCP08_22665) pilO 4896933..4897556 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PCP08_RS22680 (PCP08_22670) pilN 4897553..4898149 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  PCP08_RS22685 (PCP08_22675) pilM 4898149..4899213 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PCP08_RS22690 (PCP08_22680) - 4899398..4901869 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=697697 PCP08_RS22670 WP_003095836.1 4896412..4896936(-) (comL/pilP) [Pseudomonas aeruginosa strain F048]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=697697 PCP08_RS22670 WP_003095836.1 4896412..4896936(-) (comL/pilP) [Pseudomonas aeruginosa strain F048]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362