Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NDR85_RS09065 Genome accession   NZ_CP098738
Coordinates   1783269..1784048 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus halotolerans strain XE48     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1778269..1789048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDR85_RS09045 (NDR85_09025) trmFO 1778963..1780270 (+) 1308 WP_024121391.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NDR85_RS09050 (NDR85_09030) xerC 1780338..1781252 (+) 915 WP_044155903.1 tyrosine recombinase XerC -
  NDR85_RS09055 (NDR85_09035) clpQ 1781265..1781810 (+) 546 WP_014663962.1 ATP-dependent protease subunit ClpQ -
  NDR85_RS09060 (NDR85_09040) hslU 1781827..1783230 (+) 1404 WP_044155901.1 HslU--HslV peptidase ATPase subunit -
  NDR85_RS09065 (NDR85_09045) codY 1783269..1784048 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NDR85_RS09070 (NDR85_09050) flgB 1784431..1784820 (+) 390 WP_044155900.1 flagellar basal body rod protein FlgB -
  NDR85_RS09075 (NDR85_09055) flgC 1784820..1785272 (+) 453 WP_263870966.1 flagellar basal body rod protein FlgC -
  NDR85_RS09080 (NDR85_09060) fliE 1785283..1785603 (+) 321 WP_024121395.1 flagellar hook-basal body complex protein FliE -
  NDR85_RS09085 (NDR85_09065) fliF 1785649..1787259 (+) 1611 WP_044155897.1 flagellar basal-body MS-ring/collar protein FliF -
  NDR85_RS09090 (NDR85_09070) fliG 1787272..1788288 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  NDR85_RS09095 (NDR85_09075) fliH 1788281..1789033 (+) 753 WP_044155895.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=697545 NDR85_RS09065 WP_003220850.1 1783269..1784048(+) (codY) [Bacillus halotolerans strain XE48]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=697545 NDR85_RS09065 WP_003220850.1 1783269..1784048(+) (codY) [Bacillus halotolerans strain XE48]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTTAACTTTAAAGAAAT
GGCGGAAACGCTTCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGAAAACTTCTCGGCTACTCTATCA
ACCAGCAAATTGAAAATGACCGTATGAAAAAAATGCTTGAGGATCGCCAATTCCCAGAGGAATATACGAAGAATCTGTTC
AACGTCCCTGAAACATCTTCTAACCTGGACATCAATAGTGAGTACACTGCTTTCCCTGTTGAAAACAGAGACTTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGAGAAAGATTAGGTACACTCATTCTTTCACGTTTACAGGATC
AATTTAATGATGATGATTTAATTCTTGCTGAATACGGCGCTACAGTTGTCGGAATGGAAATTCTGAGAGAAAAAGCAGAA
GAAATTGAAGAAGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCAATCAGCTCTCTTTCTTATAGTGAGCTTGAAGCAAT
TGAACACATCTTTGAAGAGCTTGACGGAAACGAAGGTCTCCTTGTTGCAAGTAAGATTGCAGACCGTGTCGGCATTACCC
GCTCAGTTATTGTTAACGCACTCAGAAAGCTTGAAAGCGCCGGTGTAATTGAGTCAAGATCATTAGGAATGAAGGGTACT
TATATTAAAGTGCTGAACAACAAATTCCTGATTGAATTAGAAAACCTGAAATCCCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467