Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NDR85_RS09035 Genome accession   NZ_CP098738
Coordinates   1775724..1776623 (+) Length   299 a.a.
NCBI ID   WP_059335799.1    Uniprot ID   -
Organism   Bacillus halotolerans strain XE48     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1770724..1781623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDR85_RS09015 (NDR85_08995) - 1771393..1773123 (+) 1731 WP_263870996.1 hypothetical protein -
  NDR85_RS09020 (NDR85_09000) - 1773120..1773401 (+) 282 WP_193660514.1 FlhB-like flagellar biosynthesis protein -
  NDR85_RS09025 (NDR85_09005) sucC 1773575..1774732 (+) 1158 WP_003238568.1 ADP-forming succinate--CoA ligase subunit beta -
  NDR85_RS09030 (NDR85_09010) sucD 1774761..1775663 (+) 903 WP_024121388.1 succinate--CoA ligase subunit alpha -
  NDR85_RS09035 (NDR85_09015) dprA 1775724..1776623 (+) 900 WP_059335799.1 DNA-processing protein DprA Machinery gene
  NDR85_RS09040 (NDR85_09020) topA 1776812..1778887 (+) 2076 WP_044155905.1 type I DNA topoisomerase -
  NDR85_RS09045 (NDR85_09025) trmFO 1778963..1780270 (+) 1308 WP_024121391.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NDR85_RS09050 (NDR85_09030) xerC 1780338..1781252 (+) 915 WP_044155903.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 33022.28 Da        Isoelectric Point: 9.3995

>NTDB_id=697544 NDR85_RS09035 WP_059335799.1 1775724..1776623(+) (dprA) [Bacillus halotolerans strain XE48]
MDQAAACLITCRINQLLPPSLLLKWWKADPSMSLTNPSCALETASRGKVRAAALKNKIEEQYPKLQHLLSVYHQQGINVI
PISSDQYPFWLKTIYDPPPVLFAKGDISLLSQGRKIGIVGTRHPTAYGIRVVNHLTIELCHKKWVIVSGLASGIDGLSHA
ASIKAKGRTIGVIAGGFQNIYPRENLQLAEHMAKHHLLLSEHPPETKPQKWHFPMRNRIISGLSEGIIVVQGKEKSGSLI
TAYQALEQGREVFAVPGSVFDPYAGGPIKLIQEGAKAIWSAEDIYAELPEKNVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=697544 NDR85_RS09035 WP_059335799.1 1775724..1776623(+) (dprA) [Bacillus halotolerans strain XE48]
TTGGATCAGGCCGCTGCCTGTTTAATCACTTGCAGAATCAACCAATTACTACCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCCGTCAATGTCACTGACAAATCCTTCATGTGCATTAGAAACAGCTTCACGCGGCAAAGTAAGGGCTGCGGCTC
TAAAAAATAAAATAGAAGAACAATATCCAAAACTTCAGCATTTACTCTCTGTATATCATCAGCAAGGCATTAATGTCATC
CCAATATCCTCAGATCAATATCCATTCTGGCTGAAAACCATTTATGATCCGCCTCCCGTGCTGTTTGCAAAAGGTGATAT
ATCTCTTCTTTCTCAAGGGAGAAAAATAGGAATTGTAGGTACGAGACATCCGACAGCTTATGGAATTCGGGTTGTCAATC
ATCTTACAATAGAGCTTTGCCATAAAAAGTGGGTGATTGTCAGCGGGCTGGCGTCTGGGATTGACGGATTGTCCCATGCT
GCAAGTATTAAGGCGAAGGGGCGGACAATCGGAGTCATCGCAGGCGGATTTCAGAACATTTATCCTCGAGAAAATCTTCA
ATTAGCAGAACACATGGCTAAACACCATCTTCTTCTGTCAGAGCATCCACCTGAAACCAAACCCCAAAAATGGCATTTCC
CTATGAGAAACCGTATCATCAGCGGGTTAAGTGAGGGCATTATTGTTGTGCAGGGCAAAGAAAAAAGCGGTTCTTTGATT
ACCGCATACCAAGCGCTGGAACAAGGGAGAGAAGTATTTGCCGTACCCGGTTCTGTATTTGATCCTTACGCCGGAGGTCC
TATAAAATTGATTCAAGAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTATGCAGAGCTTCCTGAGAAAAACGTTC
AATATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

83.612

100

0.836