Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   M5E07_RS09655 Genome accession   NZ_CP098732
Coordinates   1957621..1958247 (-) Length   208 a.a.
NCBI ID   WP_252218823.1    Uniprot ID   A0AAE9LP49
Organism   Acinetobacter tibetensis strain Y-23     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1952621..1963247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5E07_RS09625 (M5E07_09625) - 1953040..1953471 (-) 432 WP_116758967.1 SRPBCC family protein -
  M5E07_RS09630 (M5E07_09630) tadA 1953530..1954045 (-) 516 WP_252218817.1 tRNA adenosine(34) deaminase TadA -
  M5E07_RS09635 (M5E07_09635) - 1954050..1955174 (-) 1125 WP_116758965.1 enoyl-CoA hydratase/isomerase family protein -
  M5E07_RS09640 (M5E07_09640) ung 1955171..1955884 (-) 714 WP_116758964.1 uracil-DNA glycosylase -
  M5E07_RS09645 (M5E07_09645) - 1955927..1956523 (-) 597 WP_116758963.1 6-carboxytetrahydropterin synthase -
  M5E07_RS09650 (M5E07_09650) gspK 1956631..1957578 (-) 948 WP_252218820.1 type II secretion system minor pseudopilin GspK -
  M5E07_RS09655 (M5E07_09655) xcpW 1957621..1958247 (-) 627 WP_252218823.1 type II secretion system minor pseudopilin GspJ Machinery gene
  M5E07_RS09660 (M5E07_09660) xcpV 1958250..1958621 (-) 372 WP_252218826.1 type II secretion system minor pseudopilin GspI Machinery gene
  M5E07_RS09665 (M5E07_09665) - 1958611..1959162 (-) 552 WP_252218829.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  M5E07_RS09670 (M5E07_09670) - 1959174..1959773 (-) 600 WP_116758958.1 TetR/AcrR family transcriptional regulator -
  M5E07_RS09675 (M5E07_09675) - 1959828..1960601 (-) 774 WP_252218831.1 TatD family hydrolase -
  M5E07_RS09680 (M5E07_09680) - 1960627..1960968 (-) 342 WP_116758956.1 PilZ domain-containing protein -
  M5E07_RS09685 (M5E07_09685) - 1960980..1961966 (-) 987 WP_116759014.1 AAA family ATPase -
  M5E07_RS09690 (M5E07_09690) kdsB 1961979..1962740 (-) 762 WP_252218833.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23786.28 Da        Isoelectric Point: 7.0183

>NTDB_id=697474 M5E07_RS09655 WP_252218823.1 1957621..1958247(-) (xcpW) [Acinetobacter tibetensis strain Y-23]
MQKRAGFTLVELLVAIAIFAVLSALGWKVFDYLIKVKERNAQHEQKLANLQQAYQQILKDSIQIAPLASNVNGEIEPALV
LQNDRFVFSKIGVTDPLLQGIPAEERIQYQYQADTQRLNRLRTRGLNAAAQMQPESSVLLENVEQFQVSVLNPNQLSSWP
EYEQQQDDLMQKKRLPKGIKINLTVNGVAYEWIFSLLNTDYLEQKQKS

Nucleotide


Download         Length: 627 bp        

>NTDB_id=697474 M5E07_RS09655 WP_252218823.1 1957621..1958247(-) (xcpW) [Acinetobacter tibetensis strain Y-23]
ATGCAAAAACGCGCGGGTTTTACTTTGGTCGAACTGTTGGTTGCTATCGCAATTTTTGCAGTTTTATCTGCTTTGGGTTG
GAAAGTTTTTGATTATTTAATAAAAGTAAAAGAGCGTAATGCTCAACATGAGCAGAAGTTGGCGAATTTACAACAAGCTT
ACCAGCAAATTTTGAAAGACAGTATTCAAATCGCACCGCTGGCCTCAAATGTAAATGGTGAAATTGAACCTGCTTTGGTT
CTGCAAAATGATCGTTTTGTTTTTAGTAAAATTGGTGTCACTGATCCGCTATTGCAGGGCATTCCAGCCGAGGAACGCAT
TCAATATCAATATCAAGCAGATACGCAGCGCTTAAACCGATTGCGTACGCGTGGTTTGAATGCAGCAGCACAAATGCAGC
CAGAATCAAGTGTATTACTTGAAAATGTTGAACAGTTTCAGGTAAGCGTGTTGAATCCGAATCAACTCTCCTCATGGCCT
GAATATGAGCAACAGCAAGACGATTTGATGCAAAAAAAGAGATTGCCAAAAGGAATAAAAATAAATCTAACAGTCAATGG
TGTTGCGTATGAGTGGATATTTAGTTTGCTGAATACAGATTATTTAGAGCAGAAGCAAAAAAGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)

Type II secretion system (T2SS), protein J (T2SSJ)

(73-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

55.5

96.154

0.534