Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PCP36_RS16660 Genome accession   NZ_CP115227
Coordinates   3546267..3546992 (-) Length   241 a.a.
NCBI ID   WP_174216050.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F052     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3541267..3551992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP36_RS16635 (PCP36_16630) - 3541739..3542254 (+) 516 WP_003084789.1 glycine cleavage system protein R -
  PCP36_RS16640 (PCP36_16635) rarD 3542944..3543840 (-) 897 WP_003103301.1 EamA family transporter RarD -
  PCP36_RS16645 (PCP36_16640) - 3544043..3545017 (-) 975 WP_003084794.1 serine/threonine protein kinase -
  PCP36_RS16650 (PCP36_16645) - 3545079..3545837 (-) 759 WP_003084796.1 TOBE domain-containing protein -
  PCP36_RS16655 (PCP36_16650) - 3545905..3546225 (-) 321 WP_003103307.1 YfiM family lipoprotein -
  PCP36_RS16660 (PCP36_16655) comF 3546267..3546992 (-) 726 WP_174216050.1 ComF family protein Machinery gene
  PCP36_RS16665 (PCP36_16660) - 3547131..3547424 (-) 294 WP_003113255.1 hypothetical protein -
  PCP36_RS16670 (PCP36_16665) - 3547478..3548404 (-) 927 WP_003118849.1 LysR family transcriptional regulator -
  PCP36_RS16675 (PCP36_16670) - 3548522..3549280 (+) 759 WP_003111232.1 5-oxoprolinase subunit PxpA -
  PCP36_RS16680 (PCP36_16675) - 3549357..3549605 (+) 249 WP_174216051.1 acetyl-CoA carboxylase -
  PCP36_RS16685 (PCP36_16680) - 3549616..3550991 (+) 1376 Protein_3294 acetyl-CoA carboxylase biotin carboxylase subunit -
  PCP36_RS16690 (PCP36_16685) - 3550993..3551871 (+) 879 WP_033998996.1 5-oxoprolinase subunit B family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27118.62 Da        Isoelectric Point: 11.2212

>NTDB_id=697284 PCP36_RS16660 WP_174216050.1 3546267..3546992(-) (comF) [Pseudomonas aeruginosa strain F052]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRCDP
HSLRRVLDTPTQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAERLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=697284 PCP36_RS16660 WP_174216050.1 3546267..3546992(-) (comF) [Pseudomonas aeruginosa strain F052]
ATGTCGTTCCCGCTTCGTCCTCTCACTCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCTCGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTGGACCTGCGCTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGACCCAGCAGGGGCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGCGCCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(141-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.174

100

0.382