Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   PCP36_RS10990 Genome accession   NZ_CP115227
Coordinates   2340109..2340633 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain F052     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2335109..2345633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP36_RS10975 (PCP36_10975) aroB 2336225..2337331 (-) 1107 WP_003162482.1 3-dehydroquinate synthase -
  PCP36_RS10980 (PCP36_10980) aroK 2337381..2337899 (-) 519 WP_003095833.1 shikimate kinase AroK -
  PCP36_RS10985 (PCP36_10985) pilQ 2337911..2340055 (-) 2145 WP_174216017.1 type 4a pilus secretin PilQ Machinery gene
  PCP36_RS10990 (PCP36_10990) comL/pilP 2340109..2340633 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PCP36_RS10995 (PCP36_10995) pilO 2340630..2341253 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PCP36_RS11000 (PCP36_11000) pilN 2341250..2341846 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  PCP36_RS11005 (PCP36_11005) pilM 2341846..2342910 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PCP36_RS11010 (PCP36_11010) - 2343095..2345566 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=697252 PCP36_RS10990 WP_003095836.1 2340109..2340633(-) (comL/pilP) [Pseudomonas aeruginosa strain F052]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=697252 PCP36_RS10990 WP_003095836.1 2340109..2340633(-) (comL/pilP) [Pseudomonas aeruginosa strain F052]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362