Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   NEA10_RS06045 Genome accession   NZ_CP098611
Coordinates   1397397..1398512 (-) Length   371 a.a.
NCBI ID   WP_252664376.1    Uniprot ID   -
Organism   Phormidium yuhuli AB48     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1392397..1403512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NEA10_RS06030 (NEA10_06030) - 1392997..1395543 (-) 2547 WP_252664371.1 type IV pilus secretin family protein -
  NEA10_RS06035 (NEA10_06035) - 1395709..1396605 (-) 897 WP_252664373.1 hypothetical protein -
  NEA10_RS06040 (NEA10_06040) - 1396610..1397392 (-) 783 WP_252664374.1 PilN domain-containing protein -
  NEA10_RS06045 (NEA10_06045) pilM 1397397..1398512 (-) 1116 WP_252664376.1 type IV pilus assembly protein PilM Machinery gene
  NEA10_RS06050 (NEA10_06050) - 1398815..1400035 (+) 1221 WP_252665303.1 ABC transporter substrate-binding protein -
  NEA10_RS06055 (NEA10_06055) - 1400042..1400290 (-) 249 WP_252664378.1 DUF6737 family protein -
  NEA10_RS06060 (NEA10_06060) - 1400457..1403054 (+) 2598 WP_252664380.1 TIGR03960 family B12-binding radical SAM protein -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 40745.53 Da        Isoelectric Point: 4.1203

>NTDB_id=697032 NEA10_RS06045 WP_252664376.1 1397397..1398512(-) (pilM) [Phormidium yuhuli AB48]
MANLNFLKNIFSKAKNGIGIELSPDRINVMQLSKQRQGYKILHFISEEVPEGVMQEGQILDLPSMSELIESIISEHKLKP
KHIATAIPSREAIVRLIPVPVELDDESELRDYVNQEAGLYLPFPREEADVDFQKLGSFVDEDGAEKNQLLFVATRKDVVD
SYISVFQEAGLSLDVMEVSSFAVLRCLQDQLQQFTSSEVVVTADLQFDSTEISVIVDGVPQFSRTIGIGSFQIQSALSEA
MNLPPSRNTELLQGMTLPVNTGDSMTMGTMGGNNPGTSAMMKVLGELADEVRRSIDFYMNQSDVMEVAQLFLVGPGSAVG
QLDEFFMQRLSIPTSQLDPVAALGLEMSEEDVPLVQRPGLGVVLGLGLREV

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=697032 NEA10_RS06045 WP_252664376.1 1397397..1398512(-) (pilM) [Phormidium yuhuli AB48]
GTGGCTAACTTAAACTTCCTAAAAAACATCTTCTCCAAGGCCAAGAATGGCATCGGGATTGAACTCTCTCCTGATCGCAT
CAATGTGATGCAACTGAGTAAACAGCGTCAGGGTTATAAGATTCTACACTTCATTTCCGAGGAAGTCCCCGAAGGGGTAA
TGCAGGAGGGGCAAATCCTTGACCTGCCCAGTATGTCAGAACTGATTGAATCGATCATCAGTGAGCATAAACTCAAGCCG
AAACATATTGCCACGGCGATTCCTAGTCGTGAGGCGATCGTGCGCTTGATTCCCGTCCCCGTTGAACTCGATGACGAAAG
TGAACTACGGGATTATGTGAACCAAGAGGCAGGACTTTACCTGCCATTCCCTCGGGAAGAAGCCGATGTGGACTTCCAAA
AACTGGGTTCATTCGTCGATGAGGATGGGGCCGAAAAGAACCAGCTCTTGTTTGTGGCCACCCGTAAAGATGTGGTGGAT
AGTTACATCAGTGTCTTTCAGGAAGCCGGATTGAGCCTCGACGTGATGGAAGTCAGCAGTTTTGCAGTGCTACGCTGTTT
ACAGGATCAGCTACAACAGTTCACCTCCTCGGAAGTGGTCGTTACCGCTGATCTACAATTCGATAGCACTGAAATCTCAG
TGATTGTCGATGGTGTGCCCCAGTTTTCCCGTACCATCGGGATCGGCAGCTTCCAAATTCAAAGTGCTCTCTCAGAAGCG
ATGAATTTACCCCCATCTCGTAATACAGAACTTTTACAGGGAATGACCTTGCCTGTGAATACGGGTGATAGTATGACCAT
GGGAACCATGGGTGGCAATAATCCAGGGACTAGCGCCATGATGAAAGTCCTCGGGGAACTCGCCGATGAGGTCCGTCGTT
CTATTGACTTTTACATGAACCAAAGTGACGTTATGGAGGTTGCCCAACTGTTTTTGGTGGGGCCTGGCAGTGCGGTGGGT
CAACTCGATGAGTTTTTCATGCAGCGGTTGAGTATCCCCACCAGTCAACTTGATCCAGTGGCTGCGCTAGGATTAGAGAT
GAGCGAAGAAGACGTTCCCCTCGTCCAACGTCCCGGACTAGGGGTGGTTTTAGGTCTGGGACTACGGGAGGTCTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(19-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Synechocystis sp. PCC 6803

55.191

98.652

0.544