Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   PCP90_RS30770 Genome accession   NZ_CP115224
Coordinates   6514586..6515110 (+) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain F055     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6509586..6520110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP90_RS30750 (PCP90_30740) - 6509653..6512124 (-) 2472 WP_003095841.1 penicillin-binding protein 1A -
  PCP90_RS30755 (PCP90_30745) pilM 6512309..6513373 (+) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PCP90_RS30760 (PCP90_30750) pilN 6513373..6513969 (+) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  PCP90_RS30765 (PCP90_30755) pilO 6513966..6514589 (+) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PCP90_RS30770 (PCP90_30760) comL/pilP 6514586..6515110 (+) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PCP90_RS30775 (PCP90_30765) pilQ 6515164..6517308 (+) 2145 WP_023087871.1 type 4a pilus secretin PilQ Machinery gene
  PCP90_RS30780 (PCP90_30770) aroK 6517320..6517838 (+) 519 WP_003095833.1 shikimate kinase AroK -
  PCP90_RS30785 (PCP90_30775) aroB 6517888..6518994 (+) 1107 WP_003107839.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=697011 PCP90_RS30770 WP_003095836.1 6514586..6515110(+) (comL/pilP) [Pseudomonas aeruginosa strain F055]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=697011 PCP90_RS30770 WP_003095836.1 6514586..6515110(+) (comL/pilP) [Pseudomonas aeruginosa strain F055]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362