Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NDK36_RS08920 Genome accession   NZ_CP098491
Coordinates   1693710..1694489 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain NB205     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1688710..1699489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDK36_RS08900 (NDK36_08900) trmFO 1689403..1690710 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NDK36_RS08905 (NDK36_08905) xerC 1690778..1691692 (+) 915 WP_014479777.1 tyrosine recombinase XerC -
  NDK36_RS08910 (NDK36_08910) clpQ 1691705..1692250 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  NDK36_RS08915 (NDK36_08915) hslU 1692258..1693670 (+) 1413 WP_255220399.1 HslU--HslV peptidase ATPase subunit -
  NDK36_RS08920 (NDK36_08920) codY 1693710..1694489 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NDK36_RS08925 (NDK36_08925) flgB 1694869..1695258 (+) 390 WP_014479778.1 flagellar basal body rod protein FlgB -
  NDK36_RS08930 (NDK36_08930) flgC 1695258..1695710 (+) 453 WP_014479779.1 flagellar basal body rod protein FlgC -
  NDK36_RS08935 (NDK36_08935) fliE 1695721..1696041 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  NDK36_RS08940 (NDK36_08940) fliF 1696087..1697684 (+) 1598 Protein_1706 flagellar basal-body MS-ring/collar protein FliF -
  NDK36_RS08945 (NDK36_08945) fliG 1697697..1698713 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  NDK36_RS08950 (NDK36_08950) fliH 1698706..1699458 (+) 753 WP_014479782.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=696285 NDK36_RS08920 WP_003220850.1 1693710..1694489(+) (codY) [Bacillus subtilis strain NB205]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=696285 NDK36_RS08920 WP_003220850.1 1693710..1694489(+) (codY) [Bacillus subtilis strain NB205]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467