Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   NDN12_RS08020 Genome accession   NZ_CP098479
Coordinates   1778813..1779547 (+) Length   244 a.a.
NCBI ID   WP_251111329.1    Uniprot ID   -
Organism   Acinetobacter sp. C26G     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1773813..1784547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN12_RS07985 (NDN12_07980) - 1774357..1774662 (+) 306 WP_167246745.1 hypothetical protein -
  NDN12_RS07990 (NDN12_07985) - 1774811..1775320 (+) 510 WP_005212666.1 hypothetical protein -
  NDN12_RS07995 (NDN12_07990) - 1775891..1776235 (+) 345 WP_167246747.1 PilZ domain-containing protein -
  NDN12_RS08000 (NDN12_07995) - 1776260..1777033 (+) 774 WP_251111328.1 TatD family hydrolase -
  NDN12_RS08005 (NDN12_08000) - 1777074..1777682 (+) 609 WP_167247831.1 TetR/AcrR family transcriptional regulator -
  NDN12_RS08010 (NDN12_08005) - 1777694..1778242 (+) 549 WP_167246751.1 type II secretion system protein -
  NDN12_RS08015 (NDN12_08010) xcpV 1778463..1778816 (+) 354 WP_228284319.1 type II secretion system protein Machinery gene
  NDN12_RS08020 (NDN12_08015) xcpW 1778813..1779547 (+) 735 WP_251111329.1 type II secretion system minor pseudopilin GspJ Machinery gene
  NDN12_RS08025 (NDN12_08020) gspK 1779565..1780539 (+) 975 WP_251111330.1 type II secretion system minor pseudopilin GspK -
  NDN12_RS08030 (NDN12_08025) - 1780648..1781244 (+) 597 WP_251111331.1 6-carboxytetrahydropterin synthase -
  NDN12_RS08035 (NDN12_08030) ung 1781289..1782002 (+) 714 WP_167246761.1 uracil-DNA glycosylase -
  NDN12_RS08040 (NDN12_08035) - 1781999..1783123 (+) 1125 WP_251111517.1 enoyl-CoA hydratase/isomerase family protein -
  NDN12_RS08045 (NDN12_08040) tadA 1783129..1783638 (+) 510 WP_167246765.1 tRNA adenosine(34) deaminase TadA -
  NDN12_RS08050 (NDN12_08045) - 1783705..1784145 (+) 441 WP_251111332.1 SRPBCC family protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 27447.04 Da        Isoelectric Point: 7.3913

>NTDB_id=696118 NDN12_RS08020 WP_251111329.1 1778813..1779547(+) (xcpW) [Acinetobacter sp. C26G]
MKYNSKHRSSSPHSGFTLVELLVAIAIFAVLSMLGWKVFDYLLKVKDRNAEHEMHLFALQDAYQQVLRDSLQIIPLTAND
GRQLQAAVVLNDQSFVFSKAGVSDPLKQGLSPYERIEYRYDSTQKKVYRLKYSNLNIPNRVQPVSSTLLENVDQFKVMVL
NPQELTQWPENNDPSNIAELKKLPLGIKIQLTVAGTDYEWIYSLLNTQVYLQSIGNSNGAGGGTNPPNNKDGSNSQDRTE
SSPQ

Nucleotide


Download         Length: 735 bp        

>NTDB_id=696118 NDN12_RS08020 WP_251111329.1 1778813..1779547(+) (xcpW) [Acinetobacter sp. C26G]
ATGAAATATAATTCTAAGCACAGGTCTTCTTCACCTCATTCAGGCTTTACCCTGGTGGAATTGTTGGTTGCAATTGCAAT
CTTTGCTGTGCTTTCCATGTTGGGGTGGAAAGTTTTTGATTATTTGTTAAAGGTAAAAGATCGTAATGCCGAGCATGAAA
TGCATCTATTTGCCCTGCAGGATGCATATCAACAAGTATTGAGAGATAGTTTGCAGATTATACCTTTGACAGCAAATGAT
GGAAGACAGTTACAAGCAGCTGTTGTATTGAATGATCAAAGCTTCGTATTTAGTAAGGCAGGTGTTTCCGACCCATTGAA
GCAGGGTTTATCTCCTTATGAGCGTATTGAATATCGCTATGATTCTACACAGAAAAAAGTGTATCGATTGAAATACTCAA
ATCTTAATATCCCGAATCGTGTGCAACCTGTCTCAAGTACGCTATTGGAAAATGTAGATCAGTTTAAAGTGATGGTTTTG
AACCCACAAGAATTGACGCAATGGCCAGAAAATAATGATCCAAGCAATATTGCTGAGCTAAAAAAATTACCGCTAGGCAT
AAAGATACAGTTAACTGTTGCGGGTACGGATTATGAATGGATCTATAGTTTGCTAAATACACAGGTATATTTGCAGTCTA
TAGGAAATTCAAATGGCGCAGGTGGGGGCACAAATCCACCTAATAATAAGGATGGATCTAATTCACAAGATCGTACTGAA
TCTTCACCACAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(13-34)

Type II secretion system (T2SS), protein J (T2SSJ)

(68-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

71.163

88.115

0.627