Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   NDN11_RS01590 Genome accession   NZ_CP098478
Coordinates   342104..342592 (+) Length   162 a.a.
NCBI ID   WP_251110590.1    Uniprot ID   -
Organism   Acinetobacter sp. C26M     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 337104..347592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN11_RS01575 (NDN11_01575) comE 340101..340646 (+) 546 WP_285292130.1 type IV pilin protein Machinery gene
  NDN11_RS01580 (NDN11_01580) pilE 340646..341098 (+) 453 WP_251110588.1 type IV pilin protein Machinery gene
  NDN11_RS01585 (NDN11_01585) - 341481..342107 (+) 627 WP_251110589.1 GspH/FimT family pseudopilin -
  NDN11_RS01590 (NDN11_01590) pilV 342104..342592 (+) 489 WP_251110590.1 type IV pilus modification protein PilV Machinery gene
  NDN11_RS01595 (NDN11_01595) - 342594..343619 (+) 1026 WP_251110591.1 PilW family protein -
  NDN11_RS01600 (NDN11_01600) pilX 343616..344368 (+) 753 WP_251110592.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17409.05 Da        Isoelectric Point: 5.8823

>NTDB_id=696062 NDN11_RS01590 WP_251110590.1 342104..342592(+) (pilV) [Acinetobacter sp. C26M]
MNIQKQQGVGLVEVLVALVLLAISVLGFAALQLRAIDSSFEASKQVLATTIARDLAERMRANPQATRAGKYKVKAVEVPK
TDVSMVADKPEKIALQDLQNAALEAKNNGMNLAIDQCPTGNNRQCIYVAWDETNLASDQGIAACIKDGAYVSGSHCLFLE
AY

Nucleotide


Download         Length: 489 bp        

>NTDB_id=696062 NDN11_RS01590 WP_251110590.1 342104..342592(+) (pilV) [Acinetobacter sp. C26M]
ATGAATATTCAAAAACAACAAGGTGTTGGACTCGTAGAAGTATTGGTTGCTCTGGTTTTATTGGCAATCAGCGTACTCGG
TTTTGCTGCTTTACAGTTACGGGCTATTGATTCCAGTTTTGAGGCGAGTAAACAGGTTCTGGCGACAACTATCGCGCGGG
ATTTAGCAGAACGTATGCGAGCGAATCCTCAAGCAACTCGCGCTGGAAAATATAAGGTGAAAGCGGTCGAGGTTCCTAAA
ACGGATGTCTCAATGGTAGCTGACAAACCTGAAAAAATTGCCCTACAAGATTTACAGAATGCGGCATTGGAAGCAAAAAA
TAATGGGATGAACCTTGCGATTGATCAGTGTCCGACTGGAAATAATCGACAATGTATTTATGTCGCTTGGGATGAAACCA
ATCTAGCAAGTGACCAAGGCATCGCAGCATGTATCAAAGACGGTGCTTATGTTTCTGGATCACATTGCTTGTTCTTGGAG
GCATATTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baylyi ADP1

46.067

100

0.506
  pilV Acinetobacter baumannii D1279779

36.957

100

0.42